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Search overlap between two haplocontigs P1 and P2 with masked polymorphisms. Longest common subsequence P of PC1 and PC2 is highlighted in green. Consecutive vertices of P correspond to either edges of graph or bulges and thus satisfy bulge criterion. Tail criterion is also met: last vertex of P1 matches with the last vertex of P. First vertex of P2 lies on a path that forms a bulge with subpath of P1. Thus, we report that P1 and P2 overlap.
