Table 3.
Assembly of Two S. commune (A8 and B3) Genomes
| Velvet | SPAdes | HaploMerger | SPAdes* | dipSPAdes | |
|---|---|---|---|---|---|
| Expected total length (Mbp) | 77.8 | 77.8 | 38.9 | 38.9 | 38.9 |
| Total length (Mbp) | 39.15 | 60.33 | N/A | 45.91 | 38.36 |
| No. contigs | 34406 | 26820 | N/A | 5721 | 3764 |
| Largest contig | 37580 | 44596 | N/A | 231443 | 239371 |
| N50 | 1219 | 3598 | N/A | 24931 | 27245 |
| N75 | 761 | 1694 | N/A | 8477 | 11330 |
Haplocontigs were obtained from the assembly graph that was constructed from a mixed library of A8 and B3 reads. HaploMerger failed to produce results on these haplocontigs since it typically requires haplocontigs with N50 exceeding tens of kbp.