Table 4.
Assembly of A. protococcarum
| Velvet | SPAdes (IS = 170) | SPAdes (IS = 270) | HaploMerger | SPAdes* | dipSPAdes | |
|---|---|---|---|---|---|---|
| Expected total length (Mbp) | 22.0 | 22.0 | 22.0 | 11.0 | 11.0 | 11.0 |
| Total length (Mbp) | 19.57 | 23.25 | 24.45 | 12.24 | 16.50 | 11.44 |
| No. contigs | 13926 | 4620 | 1902 | 742 | 1490 | 242 |
| Largest contig | 90937 | 138704 | 200276 | 200276 | 205337 | 433161 |
| N50 | 1656 | 8760 | 28942 | 38265 | 30393 | 141203 |
| N75 | 994 | 4689 | 14470 | 19842 | 12787 | 91307 |
Columns “SPAdes (IS = 170)” and “SPAdes (IS = 270)” illustrate results of assemblies of libraries with corresponding insert sizes. For obtaining consensus contigs we used a mixture of contigs from these runs.