Table 3.
Pairwise sequence identities of TEDs
| SfbI-A40 | SfbI-A346 | SfbI-A20 | GfbA | FbaB | Cpa-TED2 | CpTIE | CodTIE | PnTIE | BaTIE | SaTIE | CdTIE | Cpa-TED1 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SfbI-A40 | 54.2 | 54.2 | 52.3 | 27.1 | 25.8 | 27.4 | 24.3 | 12.0 | 7.6 | 7.6 | 7.2 | 50.0 | |
| SfbI-A346 | 54.2 | 49.1 | 64.3 | 22.7 | 21.4 | 31.0 | 23.4 | 9.9 | 6.9 | 6.7 | 8.0 | 46.0 | |
| SfbI-A20 | 54.2 | 49.1 | 56.4 | 26.2 | 23.7 | 27.7 | 21.3 | 8.7 | 8.2 | 5.0 | 7.6 | 52.2 | |
| GfbA | 52.3 | 64.3 | 56.4 | 22.7 | 21.0 | 29.7 | 26.0 | 9.5 | 6.6 | 6.7 | 7.5 | 50.2 | |
| FbaB | 27.1 | 22.7 | 26.2 | 22.7 | 19.1 | 21.9 | 17.7 | 19.5 | 7.8 | 8.0 | 5.5 | 24.8 | |
| Cpa-TED2 | 25.8 | 21.4 | 23.7 | 21.0 | 19.1 | 27.1 | 32.6 | 16.9 | 9.5 | 5.0 | 6.2 | 20.3 | |
| CpTIE | 27.4 | 31.0 | 27.7 | 29.7 | 21.9 | 27.1 | 24.4 | 20.1 | 8.4 | 6.7 | 7.2 | 26.8 | |
| CodTIE | 24.3 | 23.4 | 21.3 | 26.0 | 17.7 | 32.6 | 24.4 | 19.6 | 9.0 | 4.7 | 6.6 | 25.4 | |
| PnTIE | 12.0 | 9.9 | 8.7 | 9.5 | 19.5 | 16.9 | 20.1 | 19.6 | 5.2 | 5.1 | 6.0 | 21.6 | |
| BaTIE | 7.6 | 6.9 | 8.2 | 6.6 | 7.8 | 9.5 | 8.4 | 9.0 | 5.2 | 9.3 | 11.8 | 9.1 | |
| SaTIE | 7.6 | 6.7 | 5.0 | 6.7 | 8.0 | 5.0 | 6.7 | 4.7 | 5.1 | 9.3 | 9.2 | 7.0 | |
| CdTIE | 7.2 | 8.0 | 7.6 | 7.5 | 5.5 | 6.2 | 7.2 | 6.6 | 6.0 | 11.8 | 9.2 | 8.0 | |
| Cpa-TED1 | 50.0 | 46.0 | 52.2 | 50.2 | 24.8 | 20.3 | 26.8 | 25.4 | 21.6 | 9.1 | 7.0 | 8.0 |
Bold values correspond to pairs of TEDs with known structures. Values highlighted in grey indicate that a pairwise alignment was not meaningful; the values given correspond to pairwise identities as calculated from the alignment of 54 TEDs (Figure 1—figure supplement 1). Alignments of randomized sequences commonly resulted in pairwise identities of 10–20%. Pairwise alignments were produced with BioEdit using a GONNET similarity matrix.