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. 2015 May 18;2015:946787. doi: 10.1155/2015/946787

Table 2.

Expression at the mRNA and protein levels of cathepsin L-like and papain-like cysteine proteinases of Trichomonas vaginalis.

Type of CP ID Name bp aa Contig Orientation RE EST Tb Exp. reports Proteome Ref.
Accession number Total TvLI
CB-like TVAG_488380 
gb∣XP_001323959.1
gi∣123483120		 NA 765 255 DS113314 3′-5′ 4 0 0 NR NR NR [25]
CL-like TVAG_485880 
gb∣XP_001321164.1
gi∣123475979		 NA 1356 452 DS113367 3′-5′ NP 10 1 NR NR NR [25]
CL-like TVAG_484350 
gb∣XP_001304351.1
gi123413805		 NAa 873 291 DS114036 5′-3′ NP 9 2 NR NR NR [25]
CB-like TVAG_482410 
gb∣XP_001322190.1
gi∣123478051		 NA 864 288 DS113347 3′-5′ NP 0 0 NR NR NR [25]
CL-like TVAG_46797 
gb∣XP_001326005.11 
gi∣1234921851 
gb∣AAV985822 
gi∣565671862 
gb∣CAA544383 
gi∣4548903 		TvCP4 915 305 DS113280 5′-3′ NP 215 19 NR L/H L [7, 25, 27, 28, 35, 58, 65, 66, 71]
CL-like TVAG_465470 
gb∣XP_001328382.1
gi∣123502829		 NAa 915 305 DS113246 5′-3′ NP 0 0 NR NR NR [25]
CL-like TVAG_461630 
gb∣XP_001297865.1
gi∣123375585		 NA 702 234 DS115136 3′-5′ NP 0 0 NR NR NR [25]
CB-like TVAG_454200 
gb∣XP_001329727.1
gi∣123508810		 NA 759 253 DS113229 5′-3′ NP 0 0 NR NR NR [25]
CL-like TVAG_437820 
gb∣XP_001310334.1
gi∣123439119		 NAa 915 305 DS113716 5′-3′ 2 0 0 NR NR NR [25]
CL-like TVAG_427120 
gb∣XP_001306414.1
gi∣123423610		 NA 405 135 DS113910 5′-3′ NP 0 0 NR NR NR [25]
CL-like TVAG_427130 
gb∣XP_001306415.1
gi∣123423613		 NA 399 133 DS113910 5′-3′ NP 4 0 NR NR NR [25]
CL-like TVAG_410260 
gb∣XP_001323249.1
gi∣123480189		 TvCP12 945 315 DS113327 5′-3′ NP 29 3 NR L NR [25]
CL-like TVAG_405280 
gb∣XP_001325205.1
gi∣123488591		 NAa 918 306 DS113293 3′-5′ NP 0 0 NR NR NR [25]
CL-like TVAG_398510 
gb∣XP_001304940.1
gi∣123416650		 NA 411 137 DS113996 3′-5′ 3 0 0 NR NR NR [25]
CL-like TVAG_355480 
gb∣XP_001310117.1
gi∣123438675		 TvCP4-like 915 305 DS113726 5′-3′ 1 0 0 NR NR NR [25, 27]
CL-like TVAG_328620 
gb∣XP_001313029.1
gi∣123448602		 NA 303 101 DS113614 3′-5′ NP 0 0 NR NR NR [25]
CL-like TVAG_325040 
gb∣XP_001330238.1 
gi∣123975201		 NAa 873 291 DS113569 5′-3′ NP 5 1 NR NR NR [25]
CL-like TVAG_302570 
gb∣XP_001320393.1
gi∣123474420		 NA 1479 493 DS113384 5′-3′ NP 3 0 NR NR NR [25]
CL-like TVAG_298080 
gb∣XP_001316414.11 
gi∣1234573731 
gb∣ABX56032.14 
gi∣1610162004 		TvCPT/
TvCP39		 915 305 DS113482 3′-5′ 1 168 8 L L N [25, 27–29, 57, 65, 66]
CL-like TVAG_293170 
gb∣XP_001298580.1 gi∣123381478		 NA 399 133 DS114872 5′-3′ 3 0 0 NR NR NR [25]
CL- or
K-like		 TVAG_267850 
gb∣XP_001579738.1
gi∣154413416		 NAa 960 320 DS113215 5′-3′ NP 0 0 NR NR NR [25]
CL-like TVAG_257790 
gb∣XP_001313154.1
gi∣123448858		 NA 609 203 DS113609 3′-5′ NP 1 0 NR NR NR [25]
CL-, S-, or H-like TVAG_242850 
gb∣XP_001311850.1
gi∣123446194		 NA 1419 473 DS113657 5′-3′ NP 5 1 NR NR NR [25]
CL-like TVAG_228710 
gb∣XP_001580594.1
gi∣154415137		 NA 879 293 DS113206 5′-3′ NP 1 0 NR NR NR [25]
CL-like TVAG_228450 
gb∣XP_001580568.1
gi∣154415085		 NAa 915 305 DS113206 5′-3′ 1 0 0 NR NR NR [25]
CL-like TVAG_218830 
gb∣XP_001300036.1
gi∣123391254		 NA 399 133 DS114510 3′-5′ NP 6 0 NR NR NR [25]
CB-like TVAG_216350 
gb∣XP_001317882.1  
gi∣123469339		 NA 723 241 DS113443 5′-3′ NP 0 0 NR NR NR [25]
CL-like TVAG_202090 
gb∣XP_001327438.11  
gi∣1234986021 
gb∣CAA54435.13 
gi∣4522923 		CP1 927 309 DS113259 3′-5′ NP 69 12 L L N [25, 27–29, 35, 65, 66, 71]
CH-like TVAG_181310 
XP_001306268.1 GI:123422894		 NA 1464 488 DS113918 5′-3′ NP 0 1 NR NR NR [25]
CL-like TVAG_164120 
gb∣XP_001325526.1 giI123490067		 NAa 915 305 DS113287 5′-3′ 1 4 1 NR NR NR [25]
CB-like TVAG_159150 
gb∣XP_001298125.1 gi∣123377855		 NA 405 135 DS115034 3′-5′ NP 0 0 NR NR NR [25]
CL- or K-like TVAG_151460 
gb∣XP_001300085.1 gi∣123391522		 TvCP25 855 285 DS114500 5′-3′ NP 7 0 NR NR NR [25, 33]
CL-like TVAG_146680 
gb∣XP_001579911.1 gi∣154413764		 NA 951 317 DS113213 5′-3′ 1 2 0 NR NR NR [25]
CL-like TVAG_135480 
gb∣XP_001290980.1 gi∣123299807		 NAa 792 264 DS122112 3′-5′ NP 1 1 NR NR NR [25]
CL- or H-like TVAG_126090 
gb∣XP_001321671.1 gi∣123477003		 NA 1305 435 DS113357 5′-3′ NP 5 3 NR NR NR [25]
P-like TVAG_096740 
gb∣XP_001313692.1 gi∣123449986		 CP65a 915 305 DS113590 5′-3′ NP 0 0 NR NR NR [25]
P-like TVAG_090100 
gb∣XP_001314419.11 gi∣1239760111 
gb∣CAA54437.13 
gi∣4522963 		CP3a 954 318 DS113554 3′-5′ NP 178 9 L L L [25, 27, 28, 35, 65, 66]
P-like TVAG_057000 
gb∣XP_001319129.11 gi∣1234718641 
gb∣CAA54436.13 gi∣4522943 		TvCP2a 942 314 DS113412 3′-5′ 3 198 56 L L N [25, 27, 31, 35, 65, 66]
P-like TVAG_053440 
gb∣XP_001318243.1 gi∣123470070		 NAa 882 294 DS113434 5′-3′ NP 1 0 NR NR NR [25]
P-like TVAG_052570 
gb∣XP_001308929.1 gi∣123435098		 NA 300 100 DS113779 3′-5′ NP 0 0 NR NR NR [25]
P-like TVAG_047960 
gb∣XP_001330457.1 gi∣123976147		 NAa 900 300 DS113552 3′-5′ NP 2 0 NR NR NR [25]
P-like TVAG_043620 
gb∣XP_001315639.1 giI123455797		 NAa 915 305 DS113505 5′-3′ NP 0 0 NR NR NR [25]
P-like TVAG_040870 
gb∣XP_001315160.1 gi∣123454821		 NA 1386 462 DS113520 3′-5′ NP 8 2 NR NR NR [25]
P-like TVAG_034140 
gb∣XP_001318458.1 gi∣123470506		 NAa 951 317 DS113428 3′-5′ NP 20 0 NR NR NR [25]
P-like TVAG_028720 
gb∣XP_001326142.1 gi∣123492781		 NA 723 241 DS113278 3′-5′ 9 0 0 NR NR NR [25]
P-like TVAG_003650 
gb∣XP_001324382.1 gi∣123484966		 NAa 930 310 DS113306 3′-5′ NP 1 0 NR NR NR [25]
P-like TVAG_518810 
gb∣XP_001283092.1 gi∣123194565		 NAa 942 314 DS136773 5′-3′ NP 7 1 NR NR NR [25]

CB-like: cathepsin B-like CP; CL-like: cathepsin L-like CP; P-like: papain-like CP. ID: gene identification in the TrichDB (http://www.trichdb.org/) genome database or in PubMed database; NA: nonassigned name; bp: gene size in base pairs (bp); aa: protein size in amino acids (aa); contig: contig number identification; orientation: gene orientation in the contig; RE: number of repetitive elements close to CP localized in the same contig; NP: not present; EST and TvLI: Total of EST sequence and ESTs reported in low-iron conditions in TrichDB database, respectively; NR: nonreported data; H: high-iron conditions; N: normal iron conditions: L: low-iron conditions: T: upregulated genes in H or L iron concentrations.

aProteins presenting certain homology degree with TvCP4; btranscriptome information by Horváthová et al., 2012 [71]. 1Accession number reported by Carlton et al., 2007 [25]; 2accession number reported by Solano-González et al., 2007 [36]; 3accession number reported by Mallinson et al., 1994 [35]; 4accession number reported by Sommer et al., 2005 [65].