Table 3.
Differentially expressed genes upon M. javanica inoculation
| Functional categories | Sub-category | Gene ID | OE2-KAN2 | OE3-KAN3 | OE4-KAN4 | Annotation |
|---|---|---|---|---|---|---|
| TCA/ org. transformation | Carbonic anhydrases | solyc02g067750.2.1 | 1.99565 | 2.704447 | 2.324205 | Carbonic anhydrase |
| Cell wall | Degradation pectate lyases and polygalacturonases | solyc08g068150.2.1 | -1.17686 | 1.198919 | 1.5876 | BURP domain-containing protein |
| Modification | solyc08g077900.2.1 | -1.5738 | -1.34033 | -1.07768 | Expansin-like protein | |
| solyc03g093390.2.1 | -1.23629 | -1.69975 | 1.122155 | Expansin protein | ||
| Lipid metabolism | FA synthesis and FA elongation | solyc03g005320.2.1 | -1.21734 | 1.118395 | 1.412513 | Fatty acid elongase 3-ketoacyl-CoA synthase |
| Lipid degradation | solyc01g100020.2.1 | -1.6392 | -1.60844 | -1.23022 | Phospholipase D | |
| Amino acid metabolism | Synthesis | solyc01g006620.2.1 | -1.39285 | 1.576919 | 1.629744 | Phosphoribosylanthranilate trnasferase |
| Secondary metabolism | Flavonoids | solyc05g053550.2.1 | 2.880173 | 1.665111 | -1.64308 | Chalcone synthase |
| Simple phenols | solyc06go76760.1.1 | -1.14152 | 1.327023 | 1.041531 | Laccase 1a | |
| Hormone metabolism | Gibberelin synthesis/degradation | solyc12g042980.1.1 | -2.48967 | -2.80308 | -1.41139 | 2-oxoglutarate- dependent dioxygenase |
| Tetrapyrrole synthesis | Unspecified | solyc12g005300.1.1 | -1.37617 | -1.44432 | 1.099574 | Chlorophyllase 2 |
| Plant Defense | Gen to resistance/recognition | solyc11g0066401.1 | -2.44176 | 1.276086- | 1.705295 | Cc-nbs-lrr, resistance protein |
| solyc07g006710.1.1 | -1.12202 | -2.25906 | -1.15715 | Pathogenesis-related protein PR-1 | ||
| Pathogen attack response | solyc01g106640.2.1 | -1.43339 | -2.26051 | -3.62562 | Pathogenesis-related protein 1 | |
| Redox state | solyc07g039410.2.1 | -2.20729 | -1.85636 | -1.61107 | Nbs-lrr, resistance protein | |
| solyc05g046030.2.1 | -1.44323 | -1.95476 | -1.75115 | Peroxidase | ||
| solyc01g006290.2.1 | -4.44176 | -2.66733 | 1.965054 | Peroxidase | ||
| solyc01g006310.2.1 | -2.19935 | -1.68906 | -1.71087 | Peroxidase | ||
| solyc05g006740.2.1 | -1.39462 | -1.67555 | -1.25058 | Glutathione S-transferase | ||
| Miscelaneous | CytochromeP450 | solyc07g052370.2.1 | 1.592891 | 1.144126 | 2.253552 | Cytochrome P450 |
| Transcription factor | C2c2(Zn) Co-like, Constans-like zinc finger family | solyc07g066510.2.1 | -3.16422 | -2.54704 | 2.541796 | Zinc finger protein CONSTANS-LIKE 2 |
| MYB domain transcription factor family | solyc06g005310.2.1 | -1.3004 | 1.639491 | 1.189045 | MYB transcription factor | |
| solyc10g008700.1.1 | -1.65232 | 2.339096 | 1.861414 | MYB transcription factor | ||
| bZIP transcription factor family | solyc02g072570.1.1 | -1.32419 | -1.23206 | -2.44191 | Transcription factor bZIP98 | |
| Aux/IAA family | solyc08g021820.2.1 | -10.0373 | -2.64797 | -4.15734 | Auxin responsive protein | |
| Putative transcription regulator | solyc01g081320.2.1 | -1.85679 | 1.327023 | 1.545638 | Pentatricopeptide repeat-containing protein | |
| Protein metabolism | Targeting | solyc07g017520.2.1 | -1.36494 | 1.651521 | 1.06459 | Conserved oligomeric Golgi complex subunit 3 |
| Posttranslational regulator | solyc04g15120.2.1 | -1.7365 | -1.3454 | -1.44333 | U-box domain containing protein expressed | |
| solyc09g083410.2.1 | 1.002774 | 1.290076 | 1.408902 | Amidase hydantoinase/carbamoylase family protein expressed | ||
| Degradation | solyc07g054370.2.1 | -1.74661 | 2.633149 | 1.463537 | F-box/LRR-repeat protein At3g59200 | |
| Signalling | Receptor kinases | solyc12g005620.1.1 | 1.813059 | 1.988114 | 1.028337 | LRR receptor-like serine/threonine-protein kinase,RLP |
| solyc06g069740.1. | 1.354104 | 1.251148 | -2.06553 | Calmodulin-like protein | ||
| Calcium | solyc03g083320.2.1 | -1.11983 | -1.18853 | 1.489756 | Calcineurin B-like calcium binding protein | |
| solyc01g097420.1.1 | 1.390368 | 1.531115 | -1.73009 | Calcuim ATPase | ||
| G-proteins | solyc03g078570.2.1 | -1.35177 | 1.730895 | 1.078512 | Ras-related protein Rab-6A | |
| Transport | Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | solyc06g054070.2.1 | -1.12655 | -1.38876 | -1.27683 | Non-specific lipid-transfer protein |
| Sugars | solyc03g113210.2.1 | -2.97781 | -10.8452 | 1.643367 | Porin/voltage-dependent anion-selective channel protein | |
| Not assigned | Unknown | solyco1g104720.2.1 | -3.27322 | -3.93722 | -2.36617 | Unknown Protein |
| solyc07g009020.1.1 | -2.17045 | -4.1934 | -1.14893 | Unknown Protein | ||
| solyc08g078920.1.1 | -1.1221 | -1.43749 | -1.25381 | Proline-rich Protein | ||
| solyc12g049140.1.1 | -2.16278 | -3.50997 | -2.2489 | Extensin-like protein Ext1 | ||
| solyc06g051500.2.1 | -1.31051 | 3.08695 | 2.375988 | Unknown Protein | ||
| solyc07g008980.2.1 | -3.19664 | -3.89496 | -1.52861 | Unknown Protein | ||
| solyc07g009030.2.1 | -2.28689 | -3.72919 | -1.38264 | Unknown Protein | ||
| solyc07g032170.2.1 | -1.37989 | 2.61237 | 1.682212 | Abhydrolase domain- containing protein 5 | ||
| solyc04g015700.1.1 | -1.09406 | -2.77071 | -1.14691 | Unknown Protein | ||
| solyc05g009580.2.1 | -1.41924 | -1.0847 | -1.80119 | Aluminum-activated malate transporter-like | ||
| solyc12g014120.1.1 | -1.51214 | 1.122747 | 1.442261 | Unknown Protein | ||
| solyc09g097770.2.1 | 1.242743 | 1.587252 | 1.011286 | Cell wall protein | ||
| solyc03g078580.2.1 | -1.2353 | 1.865868 | 1.701912 | Unknown Protein | ||
| solyc06g005210.1.1 | 2.124099 | 1.102057 | 1.169745 | Cytochrome P450 like_TBP | ||
| solyc01g097690.2.1 | -1.95437 | -3.72554 | -1.10791 | Extensin-like protien Dif54 |
Gene ID numbers along with log2 values at each time point before and after inoculation are indicated. All genes were considered to be differentially expressed with a threshold q-value < 0.05.
Gene ID number along with log2 values at each time point before and after inoculation are indicated. All genes were considered DEGs with a cutoff q-value < 0.05.