Table 1.
Organism | Growth temp, °C | pI | Amino acid composition, % |
Flexibility analysis |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acids |
Residues |
AIf | H bonds | Rc | #Rc | df | |||||||
Hydrophobica | Chargedb | Polarc | Gly | Negd | Pose | ||||||||
P. furiosus | 100 | 4.98 | 48.8 | 27.4 | 14.7 | 9.1 | 64 | 45 | 97.74 | 295 | 1657 | 155 | 622 |
T. maritima | 80 | 4.93 | 47.2 | 28 | 16.6 | 8.2 | 66 | 48 | 98.01 | 290 | 1575 | 526 | 656 |
T. aquaticus | 70 | 5.01 | 47.5 | 27.7 | 13.7 | 11.1 | 64 | 47 | 98.27 | 296 | 1590 | 496 | 590 |
C. aurantiacus | 55 | 4.99 | 48.3 | 25.1 | 17.4 | 9.2 | 58 | 42 | 99.25 | 354 | 915 | 3405 | 525 |
E. coli | 37 | 5.32 | 45.6 | 26.4 | 17.1 | 10.9 | 59 | 48 | 89.12 | 344 | 1468 | 908 | 535 |
C. difficile | 37 | 4.58 | 46.7 | 26 | 16.3 | 10.9 | 68 | 41 | 96.42 | 343 | 1389 | 1608 | 496 |
P. falciparum | 37 | 6.21 | 45.8 | 25.1 | 21.7 | 7.4 | 55 | 53 | 97.35 | 361 | 905 | 3980 | 502 |
C. albicans | 37 | 5.54 | 46.5 | 25.7 | 18.9 | 8.9 | 57 | 49 | 92.09 | 392 | 911 | 3620 | 455 |
S. cerevisiae | 30 | 6.17 | 46 | 27.1 | 18.4 | 8.5 | 56 | 51 | 90.69 | 405 | 852 | 3826 | 406 |
T. brucei | 27 | 5.93 | 43.8 | 26.6 | 20 | 9.6 | 56 | 51 | 84.41 | 399 | 589 | 4647 | 386 |
aTotal number of hydrophobic amino acids: alanine, leucine, isoleucine, valine, proline, phenylalanine, tyrosine, tryptophan, and methionine.
bTotal number of charged amino acids: asparagine, glutamate, arginine, and lysine.
cTotal number of polar amino acids: asparagine, glutamine, serine, threonine, and cysteine.
dTotal number of negatively charged amino acids: asparagine and glutamate.
eTotal number of positively charged amino acids: arginine and lysine.
fAI – The aliphatic index of proteins is defined as the relative volume occupied by aliphatic side chains (alanine, valine, isoleucine, and leucine)
pI, principle isoelectric point; neg, negative; pos, positive; AI, aliphatic index; H bonds, hydrogen bonds; Rc, rigid clusters; #Rc, total number of sites in rigid cluster; df, total independent degrees of freedom.
Bold font indicates that the data presented in the tables are from this work.