Table 2.

Candidate genetic variants identified amongst individuals carrying autoimmunity, which are absent from controls

Chr	Position	Ref Allele	Alt Allele	Identifier	Type of mutation	Gene	Transcript ID	Exon	HGVS protein
1	39,854,131	A	C	Unknown	Nonsyn	MACF1	NM_012090	52	p.Asn3144Thr
1	39,879,412	G	A	rs55976345	Nonsyn	KIAA0754/MACF1	NM_015038	1	p.Ala1159Thr
6	109,767,639	G	C	Unknown	Intronic/potential regulatory	MICAL1	NM_001159291	*	*
1	161,719,833	C	G	Unknown	Nonsyn	DUSP12	NM_007240	1	p.Pro81Arg
7	8,196,577	A	T	Unknown	Intronic/potentially regulatory	ICA1	NM_022307	*	*
12	51,740,405	A	G	rs143199509	Splicing	CELA1	NM_001971	1	Unknown
12	57,522,754	A	C	Unknown	Nonsyn	LRP1/STAT6	NM_002332	1	p.Thr3Pro
19	1,009,552	C	G	Unknown	Nonsyn	GRIN3B	NM_138690	9	p.Ala1028Gly
19	17,392,775	C	T	Unknown	Nonsyn	BABAM1/ANKLE1	NM_001278444	1	p.Arg70Trp
19	17,392,775	C	T	Unknown	Synonymous	BABAM1/ANKLE1	NM_001278445	1	**
19	17,392,775	C	T	Unknown	Nonsyn	BABAM1/ANKLE1	NM_152363	1	p.Arg70Trp
19	19,245,591	A	C	Unknown	Splicing	TMEM161A	NM_001256766	2	Unknown
19	19,245,591	A	C	Unknown	Splicing	TMEM161A	NM_017814	2	Unknown
19	47,259,734	G	C	Unknown	Nonsyn	FKRP	NM_001039885	4	p.Glu343Gln
19	47,259,734	G	C	Unknown	Nonsyn	FKRP	NM_024301	4	p.Glu343Gln

HGVS human genome variation society.

* Intronic; ** synonymous.