Table 1. Comparison of VirSorter predictions with prophage predictors on Pseudomonasaeruginosa LES B58 genome (NC_011770).
The coordinates of each prophage known on Pseudomonas aeruginosa LES B58 genome and detection for the different tools are indicated, with absence of detection highlighted in red. For VirSorter and PHAST, the category of detection (1, 2 or 3 for VirSorter, intact, incomplete or questionable for PHAST) is also indicated. False-positive detections of genomic islands as putative prophages are highlighted in orange.
| Feature | Coordinates | VirSorter | PHAST | PhiSpy | Phage_Finder |
|---|---|---|---|---|---|
| Prophage 1 | 665,272–680,608 | Prophage – 2 | Prophage – questionable | Prophage | – |
| Prophage 2 | 863,875–906,018 | Prophage – 2 | Prophage – questionable | Prophage | Prophage |
| Prophage 3 | 1,433,756–1,476,547 | Prophage – 2 | Prophage – questionable | Prophage | Prophage |
| Prophage 4 | 1,684,045–1,720,850 | Prophage – 2 | Prophage – questionable | Prophage | Prophage |
| Genomic Island 1 | 2,504,700–2,551,100 | Prophage – 3 | Prophage – questionable | – | – |
| Prophage 5 | 2,690,450–2,740,350 | Prophage – 1 | Prophage – intact | Prophage | Prophage |
| Genomic Island 2 | 2,751,800–2,783,500 | – | – | – | – |
| Genomic Island 3 | 2,796,836–2,907,406 | – | – | Prophage | – |
| Genomic Island 4 | 3,392,800–3,432,228 | – | – | – | – |
| Prophage 6 | 4,545,190–4,552,788 | Prophage – 2 | Prophage – intact | – | – |
| Genomic Island 5 | 4,931,528–4,960,941 | Prophage – 3 | – | – | – |