Table 2. Codon-based maximum likelihood and Bayesian analysis for positively selected sites in exon 4 and exons 1, 2, and 3 combined.
Codon | SLAC | SLAC | FEL | FEL | REL | REL | MEME | MEME | FUBAR | FUBAR | Consensus | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
dN − dS | p-value | dN − dS | p-value | dN − dS | Bayes F | ω + | p-value | dN − dS | Post.Pr. | S | F | R | M | Fu | |
Positively selected sites in exon 4 | |||||||||||||||
24 | 3.97 | 0.63 | 9.15 | 0.20 | 1.60 | 2.00 | >100 | 0.13 | 0.40 | 0.83 | + | + | |||
28 | 4.79 | 0.49 | 10.80 | 0.15 | 1.63 | 2.14 | >100 | 0.19 | 0.40 | 0.83 | + | + | |||
30 | 6.63 | 0.46 | 9.98 | 0.31 | 1.46 | 1.41 | >100 | 0.02 | 0.41 | 0.87 | + | ||||
45 | −3.49 | 0.92 | −12.31 | 0.35 | −0.45 | 0.01 | >100 | 0.04 | 0.51 | 0.32 | + | ||||
47 | 4.92 | 0.46 | 7.18 | 0.21 | 1.61 | 2.21 | >100 | 0.046 | 0.37 | 0.83 | + | ||||
48 | 4.61 | 0.52 | 8.18 | 0.30 | 1.46 | 1.58 | >100 | 0.13 | 0.30 | 0.81 | + | ||||
49 | 5.50 | 0.41 | 13.24 | 0.12 | 1.65 | 2.23 | >100 | 0.16 | 0.55 | 0.86 | + | + | |||
51 | 6.90 | 0.37 | 12.22 | 0.10 | 1.71 | 2.36 | >100 | 0.11 | 0.84 | 0.94 | + | + | + | ||
55 | 4.79 | 0.48 | 10.78 | 0.13 | 1.68 | 2.45 | >100 | 0.03 | 0.42 | 0.84 | + | + | |||
57 | 7.27 | 0.32 | 12.63 | 0.11 | 1.68 | 2.21 | >100 | 0.14 | 0.74 | 0.92 | + | + | + | ||
59 | 4.94 | 0.45 | 8.24 | 0.19 | 1.63 | 2.23 | >100 | 0.22 | 0.29 | 0.81 | + | ||||
62 | 0.43 | 0.72 | 4.43 | 0.72 | −0.01 | 0.02 | >100 | 0.01 | 0.40 | 0.66 | + | ||||
Positively selected sites in exons 1, 2, and 3 combined | |||||||||||||||
42 | 10.51 | 0.38 | 240.59 | 0.11 | 7.67 | 17.23 | >100 | 0.14 | 4.37 | 0.97 | + | + | + | ||
89 | 8.90 | 0.61 | 189.86 | 0.29 | 7.25 | 10.16 | >100 | 0.30 | 3.43 | 0.93 | + |