Table 1. Primers used to completely sequence the ESBL/AmpC resistance genes.
Gene family | Primer (5’-3’) | Purpose | Reference |
---|---|---|---|
ACC group | gcatgctgattggcgtgc | PCR & Sequencing | This study |
cagccgctgatgcagaag | Sequencing | ||
ccccatattggcttgcac | Sequencing | ||
agggcgtgctgtaatacc | PCR & Sequencing | ||
ACT & MIR group | cacagtcaaatccaacagac | PCR & Sequencing | This study |
ctataagtaaaaccttcaccg | Sequencing | ||
cgtaatgcgcctcttccg | Sequencing | ||
tttttgtaggccgggtaag | PCR & Sequencing | ||
agcgccacccggcaatg | PCR & Sequencing | ||
AmpC promoter region | aatgggttttctacggtctg | PCR & Sequencing | [16] |
gggcagcaaatgtggagcaa | PCR & Sequencing | ||
CMY-2 group | atgatgaaaaaatcgttatgctgc | PCR & Sequencing | [17] |
ctccagcattggtctgtttg | Sequencing | This study | |
agttcagcatctcccagcc | Sequencing | ||
gcttttcaagaatgcgccagg | PCR & Sequencing | [18] | |
CTX-M-1 group | gtgtgagaagcagtctaaa | PCR & Sequencing | This study |
cggaaggagaaccaggaa | PCR & Sequencing | ||
Ctgggtgtggcattgatt | Sequencing | ||
Ctgggtaaagcattgggt | Sequencing | ||
Cccgaggtgaagtggtat | Sequencing | ||
Gcacacttcctaacaaca | Sequencing | ||
CTX-M-2 group | Atgatgactcagagcattcg | PCR & Sequencing | [19] |
Ttattgcatcagaaaccgtg | PCR & Sequencing | ||
CTX-M-9 group | Tggtgacaaagagagtgcaacg | PCR & Sequencing | [20] |
Tcacagcccttcggcgat | PCR & Sequencing | ||
DHA group | Gtgaatctgacgatacttgc | PCR & Sequencing | This study |
Tcacaggtgtgctgggtg | Sequencing | ||
Taaccgtacgcatactggc | Sequencing | ||
Aataatcttaaattacggccc | PCR & Sequencing | ||
Tccgcaggggcctgttcag | PCR & Sequencing | ||
SHV | Ttatctccctgttagccacc | PCR & Sequencing | [17] |
Gatttgctgatttcgctcgg | PCR & Sequencing | ||
TEM | Gcggaacccctatttg | PCR & Sequencing | [21] |
Accaatgcttaatcagtgag | PCR & Sequencing |