Table 1.
Microbiotal sequence reads data summary
| Rat ID | Source | Quality Unique Amplicons/Sample |
|---|---|---|
| S5842 | Srat_Cecum | 6,713 |
| S5843 | Srat_Cecum | 2,300 |
| S5844 | Srat_Cecum | 6,530 |
| S5845 | Srat_Cecum | 7,077 |
| S5891 | Srat_Cecum | 6,601 |
| S5892 | Srat_Cecum | 5,741 |
| S5893 | Srat_Cecum | 7,142 |
| S5894 | Srat_Cecum | 6,339 |
| R30405 | Rrat_Cecum | 5,860 |
| R30406 | Rrat_Cecum | 3,083 |
| R30419 | Rrat_Cecum | 7,948 |
| R30420 | Rrat_Cecum | 8,059 |
| R30421 | Rrat_Cecum | 2,951 |
| R30427 | Rrat_Cecum | 3,457 |
| R30428 | Rrat_Cecum | 6,245 |
| R30429 | Rrat_Cecum | 8,250 |
| S5354 | Fecal Transfer_StoS | 3,764 |
| S5355 | Fecal Transfer_StoS | 6,310 |
| S5363 | Fecal Transfer_StoS | 7,305 |
| S5365 | Fecal Transfer_StoS | 7,242 |
| S5366 | Fecal Transfer_StoS | 7,721 |
| S5376 | Fecal Transfer_StoS | 4,620 |
| S5334 | Fecal Transfer_RtoS | 4,064 |
| S5336 | Fecal Transfer_RtoS | 3,814 |
| S5342 | Fecal Transfer_RtoS | 6,879 |
| S5345 | Fecal Transfer_RtoS | 8,011 |
| S5346 | Fecal Transfer_RtoS | 1,703 |
| S5352 | Fecal Transfer_RtoS | 5,488 |
| TOTAL sequences | 161,217 |
Total raw number of sequences analyzed: 189,518. Parameters for sequences to be considered: 1) between 200 and 1,000 bp length; 2) quality score > 25. Sequences with homopolymer run exceeding 6 were removed. Amplicon sequences that matched 100% with the barcodes were used for further analysis.