Table 4.
Diversity statistics for the unigenes aligning to the Hypericum BAC clone HM06166
| Gene product | Accession | Unigenes | S/AL | Pi/AL | S/U | Pi/U | Hn/ALU |
|---|---|---|---|---|---|---|---|
| Predicted protein | XP_002883670.1 | isotig08628 | 7 | 0.007 | 4 | ||
| isotig08629 | |||||||
| isotig08630 | |||||||
| WRKY-like protein | ADK92866.1 | isotig10799 | 4 | 0.000 | 16 | 0.010 | 3 |
| isotig10800 | 11 | 0.010 | |||||
| DGCR-like protein | ADK92867.1 | isotig04455 | 9 | 0.010 | 21 | 0.022 | 3 |
| isotig04458 | 24 | 0.030 | |||||
| ARI7-like | XP_002310443.1 | isotig26043 | 98 | 0.160 | 139 | 0.081 | 4 |
| isotig07115 | 126 | 0.170 | |||||
| isotig07116 | 121 | 0.160 | |||||
| isotig07117 | 119 | 0.150 | |||||
| Thymidine kinase (TK) | ADK92870.1 | isotig09624 | 7 | 0.010 | 7 | 0.008 | 3 |
| isotig09625 | 7 | 0.010 | |||||
| HnRNP | ADK92872.1 | isotig31453 | 2 | 0.020 | 26 | 0.037 | 3 |
| isotig11295 | 3 | 0.000 | |||||
| isotig11296 | 20 | 0.030 | |||||
| RimL/acetyltransferase-domain protein | ADK92874.1 | isotig13677 | 4 | 0.010 | 0 | 0.000 | 2 |
| isotig13678 | 0 | 0.000 | |||||
| Mo25-like protein | ADK92876.2 | isotig05993 | 34 | 0.030 | 43 | 0.031 | 3 |
| isotig05994 | 36 | 0.030 | |||||
| Polygalacturonase (PG) | ADK92878.1 | isotig11051 | 3 | 0.000 | 17 | 0.012 | 3 |
| isotig11052 | 11 | 0.010 | |||||
| ITS (nuclear)** | contig00041 | 1 | 0.002 | n.a. | n.a. | 2 |
Statistics are based on multiple unigenes aligning to unique coding sequences predicted from the BAC clone HM061166, containing the HAPPY locus associated to Apospory (AL). For each coding region (Gene product), the Unigene Id, the number of polymorphic sites (S/AL) and measured nucleotide diversity (Pi/AL) are reported. The number of polymorphic sites (S/U) and nucleotide diversity (Pi/U) calculated among unigenes are also indicated. The number of haplotypes emerging from the alignment of the multiple unigenes to coding sequences predicted from the BAC clone HM061166 is indicated as Hn/ALU. **Locus not included in the BAC clone HM061166, which was used as external reference for statistics on sequence genetic diversity. Unigenes were deposited as TSA project under the accession GBXG00000000.