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. 2015 Jun 1;10(6):e0127791. doi: 10.1371/journal.pone.0127791

Table 2. Meta-analysis results for chromosome 6 SNP associations to peak creatinine during vancomycin therapy.

Primary Cohort (N = 489) Marshfield Validation (N = 343) Mayo Validation (N = 59) VGER Validation (N = 37) Meta-Analysis (Primary + Validation)
SNP Position Risk Allele RAF β (SE) P β (SE) P β (SE) P β (SE) P β (SE) Meta-P
rs2789047 121231501 A 0.28 -0.06 (0.01) 1.1x10-7 -0.02 (0.04) 0.57 -0.001 (0.07) 0.99 0.09 (0.37) 0.81 -0.05 (0.01) 1.1x10-7
rs12527161 121236583 T 0.27 -0.06 (0.01) 1.8x10-7 -0.02 (0.04) 0.63 -0.02 (0.07) 0.76 0.09 (0.37) 0.81 -0.05 (0.01) 1.8x10-7
rs9320773 121218196 A 0.27 -0.06 (0.01) 2.0x10-7 -0.01 (0.04) 0.82 -0.04 (0.08) 0.62 0.001 (0.34) 1.0 -0.05 (0.01) 2.3x10-7
rs1886249 121791852 c 0.14 -0.02 (0.01) 0.13 -0.04 (0.04) 0.35 -0.03 (0.08) 0.74 0.30 (0.43) 0.50 -0.023 (0.01) 0.081
rs3805787 121800606 c 0.23 -0.01 (0.01) 0.43 -0.03 (0.04) 0.37 -0.04 (0.07) 0.59 0.26 (0.46) 0.58 -0.012 (0.01) 0.28
rs17083553* 121775368 T 0.19 0.01 (0.01) 0.65 0.07 (0.05) 0.12 0.01 (0.07) 0.99 -0.37 (0.44) 0.41 0.009 (0.01) 0.413
rs6932373* 121832689 A 0.38 0.002 (0.01) 0.87 -0.04 (0.03) 0.27 -0.09 (0.07) 0.19 0.08 (0.23) 0.74 -0.003 (0.01) 0.752
rs2389541 121815698 c 0.31 0.01 (0.01) 0.31 -0.07 (0.04) 0.05 -0.09 (0.07) 0.20 0.10 (0.26) 0.70 0.002 (0.01) 0.805
rs17083598 121788169 g 0.06 0.01 (0.02) 0.75 -0.09 (0.06) 0.18 -0.08 (0.16) 0.62 1.01 (0.63) 0.12 -0.002 (0.02) 0.902

RAF—Risk Allele Frequency; SE—Standard Error.

*—Imputed SNP in Mayo and VGER cohorts.