Table 2. Meta-analysis results for chromosome 6 SNP associations to peak creatinine during vancomycin therapy.
Primary Cohort (N = 489) | Marshfield Validation (N = 343) | Mayo Validation (N = 59) | VGER Validation (N = 37) | Meta-Analysis (Primary + Validation) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP | Position | Risk Allele | RAF | β (SE) | P | β (SE) | P | β (SE) | P | β (SE) | P | β (SE) | Meta-P |
rs2789047 | 121231501 | A | 0.28 | -0.06 (0.01) | 1.1x10-7 | -0.02 (0.04) | 0.57 | -0.001 (0.07) | 0.99 | 0.09 (0.37) | 0.81 | -0.05 (0.01) | 1.1x10-7 |
rs12527161 | 121236583 | T | 0.27 | -0.06 (0.01) | 1.8x10-7 | -0.02 (0.04) | 0.63 | -0.02 (0.07) | 0.76 | 0.09 (0.37) | 0.81 | -0.05 (0.01) | 1.8x10-7 |
rs9320773 | 121218196 | A | 0.27 | -0.06 (0.01) | 2.0x10-7 | -0.01 (0.04) | 0.82 | -0.04 (0.08) | 0.62 | 0.001 (0.34) | 1.0 | -0.05 (0.01) | 2.3x10-7 |
rs1886249 | 121791852 | c | 0.14 | -0.02 (0.01) | 0.13 | -0.04 (0.04) | 0.35 | -0.03 (0.08) | 0.74 | 0.30 (0.43) | 0.50 | -0.023 (0.01) | 0.081 |
rs3805787 | 121800606 | c | 0.23 | -0.01 (0.01) | 0.43 | -0.03 (0.04) | 0.37 | -0.04 (0.07) | 0.59 | 0.26 (0.46) | 0.58 | -0.012 (0.01) | 0.28 |
rs17083553* | 121775368 | T | 0.19 | 0.01 (0.01) | 0.65 | 0.07 (0.05) | 0.12 | 0.01 (0.07) | 0.99 | -0.37 (0.44) | 0.41 | 0.009 (0.01) | 0.413 |
rs6932373* | 121832689 | A | 0.38 | 0.002 (0.01) | 0.87 | -0.04 (0.03) | 0.27 | -0.09 (0.07) | 0.19 | 0.08 (0.23) | 0.74 | -0.003 (0.01) | 0.752 |
rs2389541 | 121815698 | c | 0.31 | 0.01 (0.01) | 0.31 | -0.07 (0.04) | 0.05 | -0.09 (0.07) | 0.20 | 0.10 (0.26) | 0.70 | 0.002 (0.01) | 0.805 |
rs17083598 | 121788169 | g | 0.06 | 0.01 (0.02) | 0.75 | -0.09 (0.06) | 0.18 | -0.08 (0.16) | 0.62 | 1.01 (0.63) | 0.12 | -0.002 (0.02) | 0.902 |
RAF—Risk Allele Frequency; SE—Standard Error.
*—Imputed SNP in Mayo and VGER cohorts.