. 2015 Jun 2;6(3):e00531-15. doi: 10.1128/mBio.00531-15

TABLE 1 .

The expression of genes encoding extracellular proteins is lower in Δkcs1 cells than in WT cells

Identifier	Description	Relative expression of^a:			Presence of:
Identifier	Description	WT cells (fpkm)	Δkcs1 cells (fpkm)	WT/Δkcs1 (fold change)	O-linked glyco- sylation	N-linked glyco- sylation	GPI
CNAG_06291	Polysaccharide deacetylase Fpd1 (D25)	410.5	28.88	14.2
CNAG_03465	Laccase	99.52	9.259	10.7	+	+
CNAG_06346	Lipoprotein A	180.3	20.23	8.91
CNAG_02225	Glucan 1,3-β-glucosidase	335.3	53.46	6.27
CNAG_01758	Polygalacturonase	67.41	12.8	5.27		+
CNAG_06260	α-Glucosidase	42.12	8.581	4.91
CNAG_04944	Glycosyl hydrolase family 88	176.5	34.34	5.14			+
CNAG_04735	Elastinolytic metalloproteinase	517.4	111.7	4.63	+	+
CNAG_06213	Pepsin, aspartic protease	180.8	38.86	4.65	+	+
CNAG_06501	1,3-β-Glucanosyltransferase	187	46.21	4.05	+	+	+
CNAG_04380	Aspartic peptidase	14.6	3.913	3.73	+		+
CNAG_00488	Phospholipase B1-like lipase	26.23	5.983	4.38	+	+
CNAG_01040	Carboxypeptidase D	11.72	3.38	3.47		+
CNAG_07638	PLC-like phosphodiesterase	206.5	70.22	2.94	+	+	+
CNAG_00581	Aspartic peptidase	1652	607.3	2.72	+
CNAG_06251	Ser/Thr protein phosphatase	5.526	2.085	2.65	+	+
CNAG_07600	β-Glucosidase	112.5	40.76	2.76	+
CNAG_04625	Serine-type endopeptidase	339.1	139.7	2.43	+
CNAG_05471	α-Glucosidase	15.81	6.75	2.34	+	+
CNAG_05973	Serine carboxypeptidase	15.17	6.594	2.3	+
CNAG_05411	Endoglucanase	80.12	37.08	2.16	+	+
CNAG_07865	Ferro-O₂-oxidoreductase	44.08	21.82	2.02	+

^{^a}

Normalized fpkm values (fragments per kilobase of exon per million reads mapped) were generated by the Galaxy-based Cuffdiff tool and used as a measure of gene expression.