Table 2.

Long non-coding RNA Tool comparison.

		CoRAL	RNA-CODE	lncRScan	iSeeRNA	CIRI	Annocript	LncRNA2Function
Package	Online server				√			√
	Stand-alone	√	√	√	√	√	√
Applicable to	Raw data		√				√	√
	Mapped data	√		√	√	√
Input format	FASTQ/FASTA		√			√	√	√
	BAM/SAM	√				√
	BED				√
	GFF/GTF	√		√	√	√
Assembly	De novo		√				√
	Reference genome sequence	√		√	√	√		√
Known miRNA detection		√	√
Known other ncRNA detection		√	√
Novel ncRNA prediction		√		√	√	√	√	√
Expression analysis		√	√	√	√	√