TABLE 3 .
Sequencing statistics for HSV-1 variants
HSV-1 strain | Paired-end read length (bp) | No. of reads |
Genome length | % with depth of ≥100 | GenBank accession no. | |
---|---|---|---|---|---|---|
Raw | Used for assembly | |||||
KOSLarge | 100 | 14,595,444 | 10,365,343 | 150,147 | 95.5 | KM222721 |
KOSSyncytial | 100 | 22,860,146 | 17,850,556 | 150,970 | 98.3 | KM222722 |
KOSHypersyncytial | 100 | 27,307,331 | 21,072,432 | 150,585 | 98.8 | KM222723 |
FLarge | 100 | 16,543,482 | 9,258,828 | 149,692 | 98.2 | KM222724 |
FSyncytial | 100 | 14,666,531 | 11,134,103 | 148,997 | 96.6 | KM222725 |
H166 | 300 | 10,497,790 | 8,244,309 | 152,409 | 99.8 | KM222726 |
H166Syncytial | 300 | 5,732,563 | 3,267,339 | 152,262 | 96.7 | KM222727 |