Table 2.

Summary of SNPs detected in sequenced clones from population 2, where yellow indicates the presence of the SNP. Gene names in red, bold font are genes which were either mutated recurrently in our experiments, or in which mutations have been observed previously in other glucose limited chemostat evolutions.

#CHROM POS		GENE(S)	Effect	Codon	AA	REF	ALT	GSY4318	GSY4322	GSY4319	GSY4323	GSY4321	GSY4324
chrII	371865	TIP1	DOWNSTREAM			T	A
chrIV	329069	YDL073W	SYNONYMOUS	ctG/ctC	L/A	G	C
chrV	143645	MIT1	NON_SYNONYMOUS	YEL007W:c.1754T>G, YEL007W:p.Met585Arg		T	G
chrV	143646^143647	MIT1	FRAMESHIFT	YEL007W:c.1755_1756insG, YEL007W:p.Tyr586fs		-	G
chrXI	524880	PET10	NON_SYNONYMOUS	agC/agA	S/R	G	T
chrXIII	859932	LCB1	NON_SYNONYMOUS	gaC/gaA	D/E	G	T
chrXV	988368	PUT4	NON_SYNONYMOUS	Tgc/Cgc	C/R	A	G
chrII	600545	PCH2	UPSTREAM			A	G
chrVI	108690	IES1	NON_SYNONYMOUS	gAg/gGg	E/G	T	C
chrXIII	420692	tV(AAC)M2	UPSTREAM			A	G
chrXI	313785	tH(GUG)K	UPSTREAM			C	T
chrXII	770185	BUD6	NON_SYNONYMOUS	aaC/aaA	N/K	G	T
chrXIV	368081	SRV2	NON_SYNONYMOUS	ttT/ttA	F/L	T	A
chrIV	1462683	GIN4	STOP_GAINED	tCa/tGa	S/*	G	C
chrX	179937	PBS2	NON_SYNONYMOUS	gCt/gGt	A/G	G	C
chrMito	57268		INTERGENIC			T	A
chrXII	405042	ACE2	NON_SYNONYMOUS	tAc/tCc	Y/S	T	G
chrII	85054	SSA3	SYNONYMOUS	gcT/gcG	A/A	A	C
chrX	237313	LSB6	NON_SYNONYMOUS	aaG/aaC	K/N	G	C
chrX	364859	MHP1	NON_SYNONYMOUS	gCa/gTa	A/V	C	T
chrXIV	144125	IST1, PIK1	DOWNSTREAM			C	G
chrXVI	926957	OPT2	UPSTREAM			G	T
chrVII	44172	TAD1	NON_SYNONYMOUS	cCa/cGa	P/R	C	G
chrXV	902077	SPS4	NON_SYNONYMOUS	atT/atG	I/M	A	C
chrV	476850	BEM2	NON_SYNONYMOUS	gGa/gCa	G/A	C	G
chrVIII	197604	INM1	NON_SYNONYMOUS	Tat/Cat	Y/H	A	G
chrXII	953417	PUN1	NON_SYNONYMOUS	aGc/aAc	S/N	C	T
chrXIV	736085	BIO3	DOWNSTREAM			C	T