. Author manuscript; available in PMC: 2015 Dec 1.

Published in final edited form as: Genomics. 2014 Nov 1;104(6 0 0):431–437. doi: 10.1016/j.ygeno.2014.10.011

Table 3.

Summary of SNPs detected in sequenced clones from population 3, where yellow indicates the presence of the SNP. Gene names in red, bold font are genes which were either mutated recurrently in our experiments, or in which mutations have been observed previously in other glucose limited chemostat evolutions.

#CHROM	POS	GENE(S)	Effect	Codon	AA	REF	ALT
chrII	371865	TIP1	DOWNSTREAM			T	A

chrI	128481	SYN8	FRAMESHIFT		S/Frameshift	G	-

chrV	364256	SSA4	UPSTREAM			A	G

chrVIII	519892	CRG1	SYNONYMOUS	ccC/ccT	P/P	C	T

chrXV	178574	IRA2	NON_SYNONYMOUS	aCa/aAa	T/K	C	A

chrMito	80513	COX3	DOWNSTREAM			C	G

chrIV	1289911	SIZ1	NON_SYNONYMOUS	tCt/tAt	S/Y	C	A

chrX	666710	STR2	NON_SYNONYMOUS	tCt/tTt	S/F	G	A

chrXII	147914	DNM1	NON_SYNONYMOUS	Cct/Act	P/T	C	A

chrXV	606620	MDM32	NON_SYNONYMOUS	cGt/cCt	R/P	G	C

chrIV	67810	TIM22, YDL218W	DOWNSTREAM			C	A

chrIV	183707	RPC53	NON_SYNONYMOUS_CODING	tCt/tTt	S/F	C	T

chrVIII	167568	YHR028W-A	NON_SYNONYMOUS	YHR028W-A:c.217T>G,218C>G,219C>A		TCC	GGA

chrX	304208	JEM1	NON_SYNONYMOUS	tCg/tGg	S/W	C	G

chrXI	158736	RPS27A	INTRON			A	G

chrXI	647912	FLO10	SYNONYMOUS	tcT/tcA	S	T	A

chrXVI	416459	YTA6	NON_SYNONYMOUS	Caa/Aaa	Q/K	C	A

chrII	452501	PHO88	UPSTREAM			G	T

chrXV	557840	UBP2	NON_SYNONYMOUS	aGa/aCa	R/T	C	G

chrIII	283793	CDC39	NON_SYNONYMOUS	tAt/tGt	Y/C	A	G

chrVII	321148		INTERGENIC			T	C

chrVIII	524447		INTERGENIC			C	G

chrIV	675571	YDR109C	NON_SYNONYMOUS	Caa/Aaa	Q/K	G	T

chrIV	785856	TRM82	NON_SYNONYMOUS	aCa/aTa	T/I	C	T

chrVIII	418602	TDA11	STOP_GAINED	Gag/Tag	E/*	G	T

chrIX	89756	TMA108, TPM2	INTERGENIC			G	C

chrXII	838026	ILV5	DOWNSTREAM			C	A

chrXV	179275	IRA2	STOP_GAINED	Gag/Tag	E/*	G	T

chrXVI	95218	CIN2, IQG1	INTERGENIC			G	A

chrXVI	421772	MUK1	STOP_GAINED	taC/taA	Y/*	C	A

chrV	143507	MIT1	NON_SYNONYMOUS	gAa/gCa	E/A	A	C

chrXII	921722	BDF1, YLR400W	UPSTREAM			C	G

chrXV	213387	PRS5	NON_SYNONYMOUS	Acc/Gcc	T/A	A	G

chrIX	69868	SLN1	NON_SYNONYMOUS	Cca/Gca	P/A	G	C

chrXIV	119311	BOR1	NON_SYNONYMOUS	aCa/aGa	T/R	C	G

chrXVI	898617	SEC23	NON_SYNONYMOUS	Gat/Cat	D/H	C	G

chrMito	10368		INTERGENIC			T	C

chrMito	84816	RPM1, tM(CAU)Q2	UPSTREAM			A	T