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. 2015 Jun 3;10(6):e0127499. doi: 10.1371/journal.pone.0127499

Table 2. Polymers potentially targeted by Latescibacteria, their distribution and occurrence in algae, structure, degradation enzymes encoded in the Latescibacterial SAGs, potential degradation products, their transport systems encoded in the SAGs, and ultimate central catabolic pathway.

Polymer Distribution Degradation Products Transport system Central pathway
1. Pectin
Homogalacturonan Land plants and Charophyta green algae Pectin methylesterase Pectinate/ Pectate (demethylated) EMP
Pectin acetylesterase Deacetylated polymer
Pectin lyase, pectate lyase Oligosaccharides with 4-deoxy-α-D-galact-4-enuronosyl groups at their non-reducing ends
Exopolygalacturonate lyase digalacturonate
Oligogalacturonide lyase 5-dehydro-4-deoxy-D-glucuronate ExuT symporter
galacturonic acid
Rhamnogalacturonan I Pectin methylesterase Demethylated RGI
Pectin acetylesterase Deacetylated RGI
Rhamnogalacturonan endolyase Oligosaccharides with L-rhamnopyranose at the reducing end and 4-deoxy-4,5-unsaturated D-galactopyranosyl uronic acid at the non-reducing end
Rhamnogalacturonan exolyase disaccharide 2-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)-alpha-L-rhamnopyranose
d-4,5-unsaturated β-glucuronyl hydrolase rhamnose Rhamnose:proton symporter BMC
5-dehydro-4-deoxy-D-glucuronate ExuT symporter EMP
β-galactosidase Galactose Galactose:sodium symporter EMP
Alginates Brown Algae Poly β-D-mannuronate lyase Oligosaccharides with 4-deoxy-α-L-erythro-hex-4-enopyranuronosyl groups at their non-reducing ends
Oligoalginate lyase 4-deoxy-α-L-erythro-hex-4-enopyranuronose spontaneously converted to 5-dehydro-4-deoxy-D-glucuronate ExuT symporter EMP
2. Fucans
Homofucan Brown Algae Sulfatase Unsulfated homofucans
Fucoidan lyase-like protein (hypothetical protein) Unsaturated, non-sulfated di- and tetrasaccharides
α-L-fucosidase Fucose Fucose:proton symporter BMC
Xylofucogalactan/ xylofucomannan Sulfatase Unsulfated fucans
α-L-fucosidase Fucose Fucose:proton symporter BMC
β-glucuronidase Glucuronic acid ExuT symporter EMP
Xylofucoglucuronan Sulfatase Unsulfated fucans
α-L-fucosidase Fucose Fucose:proton symporter BMC
3. Ulvans Chlorophyta Sulfatase Unsulfated ulvans
Heparin lyase Unsaturated, non-sulfated di- and tetrasaccharides
d-4,5-unsaturated β-glucuronyl hydrolase 5-dehydro-4-deoxy-D-glucuronate ExuT symporter EMP
Rhamnose Rhamnose:proton symporter BMC
Xylose Xylose:proton symporter PPP
4. Xyloglucan Land plants, some green algae endo-β-1,4-glucanase A mixture of oligosaccharides
α-1,2-fucosidase Fucose Fucose:proton symporter BMC
β-galactosidase Galactose Galactose:sodium symporter EMP
β-glucosidase Glucose Glucose:sodium symporter EMP
5. Hydroxyproline-rich glycoprotein (HRGP)
Extensin Land plants, some green algae β-L-arabinofuranosidase Arabinose ABC transporter PPP
Arabinogalactan protein (AGP) endo-β-1,6-galactanase (?) galactan oligosaccharides
β-glucuronidase Glucuronic acid ExuT symporter EMP
α-Fucosidase Fucose Fucose:proton symporter BMC
α-rhamnosidase Rhamnose Rhamnose:proton symporter BMC
β-galactosidase Galactose Galactose:sodium symporter EMP
6. Others
Extracellular proteins All organisms Non-specific endopeptidases Oligopeptides ABC transporter
Dipeptidases Dipeptides ABC transporter
Dipeptide peptidase, aminopeptidases, or Carboxypeptidases Free amino acids Symporters for Pro, Ala, Asp, Glu, Gly, cationic aaABC transporter for Pro EMP (Asp and Glu)
Starch Land plants, and green algae storage compounds α-amylase Oligosaccharides
α-glucosidase Glucose Glucose:sodium symporter EMP
Trehalose Brown algae storage compound Trehalase Glucose Glucose:sodium symporter EMP
Glucose-1-P
Poly-D-galactosamine Some fungi such as Aspergillus, and Neurocrassa Endo1,4-poly-D-galactosaminidase Galactosamine PTS EMP