Table 3.

The most confident hetero-interactions in the predicted maize interactome^*.

Protein A**	Protein B**	Protein A description	Protein B description	CV
008327_P01	061287_P01	Cell division control protein 2 homolog	Cyclin superfamily protein, putative	12960
056075_P01	110212_P01	DNA mismatch repair protein MSH2	MUS2 protein	10752
AC149818.2_FGP004	008327_P01	Cyclin-dependent kinases regulatory subunit	Cell division control protein 2 homolog	9450
045314_P01	064732_P01	Guanine nucleotide-binding protein subunit beta	G protein alpha subunit 1	6720
008327_P01	017081_P01	Cell division control protein 2 homolog	Uncharacterized protein	6120
033626_P02	061745_P01	26S proteasome non-ATPase regulatory subunit 14	Uncharacterized protein	5880
093050_P01	174757_P01	Eukaryotic translation initiation factor 3 subunit A	Uncharacterized protein	5772
040152_P02	088162_P01	Unknown	Putative uncharacterized protein	5760
047774_P01	105409_P02	Uncharacterized protein	Unknown	5616
028313_P03	452026_P01	Putative translation elongation/initiation factor	Eukaryotic peptide chain release factor subunit 1-1	5124
071518_P01	085970_P01	Spc97/Spc98 family of spindle pole body (SBP) component	Tubulin gamma-2 chain	5040
046021_P01	177974_P02	Histone acetyltransferase of the GNAT family 1	Uncharacterized protein	4320
043484_P01	148924_P02	Histone-lysine N-methyltransferase EZ3	Polycomb group protein FIE2	3696
161418_P02	168096_P01	TATA-box-binding protein 2	DNA binding	3640
021069_P01	066101_P02	Minichromosome maintenance protein	Unknown	3584
133952_P01	356935_P01	MUTL-homolog 1	Uncharacterized protein	3432
AC234199.1_FGP003	048067_P01	Unknown	Uncharacterized protein	3360
152328_P01	556845_P01	Actin-1	Unknown	3315
054225_P01	402295_P01	DNA-directed RNA polymerase	Unknown	3312
042371_P01	100872_P01	Elongator protein 2	Uncharacterized protein	3024

^*Unique one-to-one interactome interactions with the highest confidence values.

^**GRMZM2G prefix for identifiers removed for space.