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. Author manuscript; available in PMC: 2016 Apr 14.
Published in final edited form as: J Chem Theory Comput. 2015 Mar 11;11(4):1792–1808. doi: 10.1021/ct5009558

Figure 16.

Figure 16

Illustration of three orientations of polar uncharged side chain-phosphate group interactions for (a) θij(1)=0° (head-to-phosphate), (b) θij(1)=90° (side-to-phosphate), and (c) θij(1)=180° (tail-to-phosphate), respectively. The solid line represents the long axis of the polar uncharged side chain. The circle at one end of the solid line represents the dipole on the polar uncharged side chain (PSC). The black circle represents phosphate group (P).