Table 2.
Unique fragmentation pattern (5′-3′) generated by in silico digestion of common genes present in Clostridium strains: AluI
| Organism | Strain | recN | dnaJ | secA |
|---|---|---|---|---|
| C. beijerinckii | NCIMB 8052 | ·240·483·310·50· | ·74·33·26·190·491·175·47· | ·9·109·435·366·218·40·129·45·35·247·331·95·258·60· |
| C. botulinum | 230613 | ·162·19· | ·90·129·69· | – |
| Alaska E43 | ·575·22· | – | ·357·117·120·129·105·362·476·143·150·156·99· | |
| BKT015925 | ·99·762·534· | ·21·135·63·11·58·309·270·33·76· | ·207·312·430·35·45·135·132·15·105·9·129·165·60·150·244· | |
| Eklund 17B | ·13·17·575·121· | – | ·357·117·120·129·1086·306·99· | |
| Kyoto | ·162·19·616·285·70·30·213· | ·90·129·69·594·33·30·42·15· | – | |
| 657 | ·162·19·221·275·120·285·70·30·213· | ·21·69·129·69·594·33·30·42·15· | ·44·6·306·150·87·30·9·102·9·81·39·9·42·438·234· | |
| Langeland | ·162·19·496·120·134·33·118·70·30·213· | ·90·129·69·627·30·42·15· | – | |
| Loch Maree | ·162·19·97·54·465·91·76·118·70·30·213· | ·15·75·129·69·594·33·72·15· | ·44·67·306·150·87·30·9·102·9·81·39·9·42·63·129·246·207·27· | |
| Okra | ·162·19·221·275·120·167·118·70·30·213· | ·90·129·69·594·33·72·15· | ·44·67·306·150·87·30·9·102·9·81·39·9·42·438·207·27·230· | |
| H04402 065 | ·168·19·230·287·126·173·124·73·30·222· | ·93·135·72·618·36·30·45·15· | ·44·70·321·156·90·30·12·105·9·84·42·9·45·443·13·216·27· | |
| C.cellulovorans | 743B | ·58·47·920·113·410· | ·80·35·278·192·184· | ·291·88·7·245·672·42·9·120·9·378·171·73·62· |
| C. kluyveri | DSM 555 | ·897·165· | – | – |
| C.ljungdahlii | DSM 13528 | ·565·188·286·32· | ·282·33·39·85·282·11· | ·523·287·9·234·233·486·241·159·134· |
| C. novyi | NT | ·193·132· | ·109·342·282·17·181·33·30·57· | ·249·63·465·45·153·12·102·37·83·9·354·49·101·99·145·35· |
| C. perfringens | 13 | ·252·75·9·240·325·150·105·158·246· | ·388·120· | ·333·36·322·161·387·9·66·54·177·351·165·23· |
| ATCC 13124 | ·4·248·75·9·240·325·150·105·158·246· | ·125·157·231·120· | ·93·27·306·36·322·161·387·9·66·54·177·351·165·23· | |
| SM101 | ·4·248·75·9·240·123·202·150·5·100·158·246· | ·305·157·231·120· | ·333·36·219·103·161·171·216·75·54·177·351·165·23· | |
| C. tetani | 12124569 | ·88·183·211·113· | ·330·156·45·33· | ·21·552·56·184·9·314·153·220·372·273·159· |
| E88 | ·121·70·6·159·420· | ·124·330·156·45·33·72· | ·21·213·339·240·9·314·153·220·372·273· |
Symbol (·) indicates RE site in the gene sequences