. Author manuscript; available in PMC: 2016 Aug 1.

Published in final edited form as: Biochim Biophys Acta. 2015 Apr 18;1854(8):1019–1037. doi: 10.1016/j.bbapap.2015.04.015

Table 4.

Input used for Option A examples.

Gene Name	FASTA
MtOMPDC	`>sp\|O26232\|PYRF_METTH Orotidine 5′ – phosphate decarboxylase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pyrF PE=1 SV=1` `MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK RFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFL LTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVG AQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP`
BsOMPDC	`>sp\|P25971\|PYRF_BA CSU Orotidine 5′ – phosphate decarboxylase OS=Bacillus subtilis (strain 168) GN=pyrF PE=1 SV=1` `MKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDL KLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQL TSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPG IRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIKS`
EcOMPDC	`>sp\|P08244\|PYRF_ECOLI Orotidine 5′ – phosphate decarboxylase OS=Escherichia coli (strain K12) GN=pyrF PE=1 SV=1` `MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVREL QQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAP LLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQE FKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQRS A`
ScOMPDC	`> sp\|P03962\|PYRF_YEAST Orotidine 5′ – phosphate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=URA3 PE=1 SV=2` `MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTH VDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAH GVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFI AQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK GRDAKVEGERYRKAGWEAYLRRCGQQN`