Table 2.
Associations of nominally significant vitamin D pathway SNPS and lethal prostate cancer stratified by high vs. low 25(OH)D
| Gene: SNP (Major/Minor allele) | OR* and 95% CI for low 25(OH)D strata | p-value | OR* and 95% CI for high 25(OH)D strata | p-value | p-interaction# |
|---|---|---|---|---|---|
| VDR:rs2239186(A,G) | 1.26(0.88-1.78) | 0.20 | 1.44(1.01-2.05) | 0.04 | 0.44 |
| VDR:rs2189480(G,T) | 1.44(1.05-1.97) | 0.02 | 1.12(0.83-1.50) | 0.47 | 0.60 |
| VDR:rs2283342(A,G) | 1.07(0.72-1.57) | 0.75 | 1.59(1.09-2.32) | 0.02 | 0.15 |
| VDR:rs12721364(G,A) | 1.34(0.89-2.02) | 0.16 | 0.67(0.44-1.02) | 0.06 | 0.05 |
| VDR:rs10875693(T,A) | 0.66(0.46-0.96) | 0.03 | 1.16(0.82-1.64) | 0.42 | 0.23 |
| VDR:rs4760648(C,T) | 0.85(0.63-1.14) | 0.27 | 1.23(0.90-1.69) | 0.19 | 0.03 |
| GC:rs1155563(T,C) | 0.96(0.69-1.33) | 0.81 | 1.54(1.10-2.14) | 0.01 | 0.12 |
| GC:rs1491716(G,A) | 0.50(0.25-0.98) | 0.04 | 1.25(0.68-2.30) | 0.48 | 0.70 |
| GC:rs6817912(C,T) | 1.93(1.00-3.70) | 0.05 | 0.93(0.48-1.81) | 0.83 | 0.72 |
| GC:rs12640179(C,G) | 1.81(0.99-3.31) | 0.05 | 0.72(0.36-1.48) | 0.37 | 0.03 |
| CYP27A1:rs647952(A,G) | 0.20(0.05-0.74) | 0.02 | 1.28(0.48-3.41) | 0.63 | 0.51 |
| CYP2R1:rs2060793(G,A) | 1.34(1.00-1.79) | 0.05 | 1.13(0.84-1.52) | 0.42 | 0.03 |
| CYP2R1:rs12794714(G,A) | 0.69(0.51-0.93) | 0.01 | 0.86(0.63-1.16) | 0.32 | 0.04 |
| CYP2R1:rs1562902(T,C) | 1.41(1.04-1.90) | 0.03 | 1.05(0.79-1.42) | 0.72 | 0.004 |
| CYP2R1:rs10832312(T,C) | 1.65(1.02-2.65) | 0.04 | 0.88(0.52-1.49) | 0.64 | 0.04 |
| CYP2R1:rs11023374(T,C) | 0.75(0.53-1.07) | 0.11 | 0.97(0.68-1.38) | 0.85 | 0.01 |
| CYP24A1:rs2585413(G,A) | 0.93(0.67-1.29) | 0.67 | 0.71(0.51-0.98) | 0.04 | 0.48 |
| CYP24A1:rs2585415(G,A) | 0.99(0.72-1.35) | 0.93 | 0.70(0.51-0.96) | 0.03 | 0.21 |
| CYP24A1:rs927650(C,T) | 0.99(0.73-1.33) | 0.94 | 1.50(1.11-2.04) | 0.009 | 0.19 |
| CYP24A1:rs3787555(C,A) | 1.40(1.00-1.96) | 0.05 | 0.81(0.57-1.16) | 0.25 | 0.78 |
| RXRA:rs1536475(G,A) | 1.09(0.73-1.61) | 0.69 | 0.79(0.51-1.20) | 0.27 | 0.03 |
Per-minor allele odds ratio for fatal prostate cancer, adjusted for age at diagnosis
Wald p-value for SNP coded (0,1,2)*25(OH)D (continuous); 25(OH)D was standardized by cohort, season, and laboratory assay batch.