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. Author manuscript; available in PMC: 2016 Aug 1.
Published in final edited form as: Biochim Biophys Acta. 2015 Apr 20;1854(8):869–881. doi: 10.1016/j.bbapap.2015.04.013

Table 3.

Kinetic parameters for 1-methylimidazole binding into the Trp-191 cavity of the yCcP/MIM complex. a

pH KAapp b
(M−1)
KA2
(M−1)
k4
(M−1 s−1)
4.1 4.72 (2.94 ± 0.28) × 102 (1.55 ± 0.08) × 10−1
4.5 4.37 (9.19 ± 0.52) × 101 (2.49 ± 0.16) × 10−2
5.0 3.53 (1.74 ± 0.17) × 102 (2.72 ± 0.35) × 10−2
5.5 2.48 (1.73 ± 0.35) × 102 (1.14 ± 0.03) × 10−2
6.0 1.74 (2.64 ± 0.18) × 102 (1.60 ± 0.03) × 10−2
6.5 1.40 (2.13 ± 0.27) × 102 (1.26 ± 0.03) × 10−2
7.0 1.30 (2.13 ± 0.81) × 103 (9.21 ± 3.17) × 10−3
7.5 1.24 (4.52 ± 5.10) × 103 (5.48 ± 1.2) × 100
a

The data in Fig. 7 were fit to Eq. 5 for the Extended Cavity Model – Scheme 2 in the text. Four of the parameters defined in Scheme 2 have fixed values, independent of pH: k1 = 9.4 × 10−5 s−1; k−1 = 2.3 × 10−3 s−1; K3 = 0.041. KA1 varies with pH according to the relationship KA1 = 0.04KAapp.

b

KAapp was calculated from the best-fit line shown in Fig. 5.