Table 3.
Kinetic parameters for 1-methylimidazole binding into the Trp-191 cavity of the yCcP/MIM complex. a
| pH |
b (M−1) |
KA2 (M−1) |
k4 (M−1 s−1) |
|---|---|---|---|
| 4.1 | 4.72 | (2.94 ± 0.28) × 102 | (1.55 ± 0.08) × 10−1 |
| 4.5 | 4.37 | (9.19 ± 0.52) × 101 | (2.49 ± 0.16) × 10−2 |
| 5.0 | 3.53 | (1.74 ± 0.17) × 102 | (2.72 ± 0.35) × 10−2 |
| 5.5 | 2.48 | (1.73 ± 0.35) × 102 | (1.14 ± 0.03) × 10−2 |
| 6.0 | 1.74 | (2.64 ± 0.18) × 102 | (1.60 ± 0.03) × 10−2 |
| 6.5 | 1.40 | (2.13 ± 0.27) × 102 | (1.26 ± 0.03) × 10−2 |
| 7.0 | 1.30 | (2.13 ± 0.81) × 103 | (9.21 ± 3.17) × 10−3 |
| 7.5 | 1.24 | (4.52 ± 5.10) × 103 | (5.48 ± 1.2) × 100 |
The data in Fig. 7 were fit to Eq. 5 for the Extended Cavity Model – Scheme 2 in the text. Four of the parameters defined in Scheme 2 have fixed values, independent of pH: k1 = 9.4 × 10−5 s−1; k−1 = 2.3 × 10−3 s−1; K3 = 0.041. KA1 varies with pH according to the relationship KA1 = 0.04.
was calculated from the best-fit line shown in Fig. 5.