Table 2. The extended terpenoid phenotypic module in Arabidopsis, including triterpene- specific (C30) synthases.
Gene ID | Annotation | Description A | Tandem duplicate | Bowers pair B | Reference C |
---|---|---|---|---|---|
Methylerythritol phosphate (MEP) pathway | |||||
AT4G15560 | DXPS2 | Desoxy-xylulosephosphatesynthase 2 | Yes | A15N013 | Lange et al., 2003 |
Triterpene-specific synthases | |||||
AT1G62730 | - | N/A; Squalene/phytoene synthase | No | - | Wang et al., 2008 |
AT1G66960 | LUP5 | Lupeol synthase 5 | Yes | - | Herrera et al., 1998 |
AT1G78480 | - | N/A; Prenyltransferase/squalene oxidase | Yes | - | Hanada et al., 2010 |
AT1G78500 | PEN6 | Pentacyclic triterpene synthase 6 | Yes | - | Husselstein-Muller et al., 2001 |
AT1G78950 | LUP4 | Lupeol synthase 4 | Yes | - | Benveniste et al., 2002 |
AT1G78955 | CAMS1 | Camelliol synthase 1 | Yes | - | Kushiro et al., 1998 |
AT1G78960 | LUP2 | Lupeol synthase 2 | Yes | - | Herrera et al., 1998 |
AT1G78970 | LUP1 | Lupeol synthase 1 | Yes | - | Herrera et al., 1998 |
AT3G29255 | - | N/A; Squalene cyclase (InterPro:IPR018333) | Yes | - | this manuscript |
AT2G07050 | CAS1 | Cycloartenol synthase 1 | - | - | Lange et al., 2003 |
AT3G45130 | LAS1 | Lanosterol synthase 1 | - | - | Benveniste et al., 2002 |
AT4G15340 | PEN1 | Pentacyclic triterpene synthase 1 | Yes | - | Husselstein-Muller et al., 2001 |
AT4G15370 | PEN2 | Pentacyclic triterpene synthase 2 | Yes | - | Husselstein-Muller et al., 2001 |
AT5G36150 | PEN3 | Pentacyclic triterpene synthase 3 | - | - | Husselstein-Muller et al., 2001 |
AT5G42600 | MRN1 | Marernal Synthase 1 | - | - | Benveniste et al., 2002 |
AT5G48010 | THAS1 | Thalianol Synthase 1 | Yes | - | Benveniste et al., 2002 |
Function not clear | |||||
AT1G48820 | - | N/A; tandem duplicate of TPS28 | Yes | - | Lange et al., 2003 |
AT2G37140 | - | N/A; best BLAST hit is TPS1 | - | - | Lange et al., 2003 |
Three letter gene abbreviations are adapted from the Arabidopsis Information Resource A .
A TAIR10, www.arabidopsis.org, last accessed on December 13th, 2014.
B Ohnolog pair according to Bowers et al., 2003.
C For a comprehensive review, see Tholl and Lee, 2011.