Table 1.
FPR of Spearman’s Rank Correlation Coefficients on SNPs with Two Different MAFs, 5% and 30%
| Threshold |
MAF 30% |
MAF 5% |
||
|---|---|---|---|---|
| FPR | TF Ratio | FPR | TF Ratio | |
| 0.01 | 0.0101525 | 0.984981 | 0.0094544 | 1.05771 |
| 0.001 | 0.0010509 | 0.951554 | 0.0008058 | 1.24099 |
| 0.0001 | 0.0001108 | 0.902454 | 6.161E−5 | 1.62298 |
| 1E−5 | 1.191E−5 | 0.839278 | 3.883E−6 | 2.57533 |
| 1E−6 | 1.328E−6 | 0.755398 | 2.121E−7 | 4.71385 |
TF ratio is the ratio between the threshold and FPR, (threshold/FPR). FPR is measured from the generation of many null datasets, and a p value of Spearman’s correlation is computed from a t distribution. A sample size of 144 individuals was used.