Table 3.

Classification of all detected alternative splicing events in tomato

Samples	3pMXE	5pMXE	A3SS	A3SS and ES	A5SS	A5SS and ES	Cassette Exon	ESx	IntronR	MXE	Total	Detected novel junctionx	AS/100 novel SJ
C0	187	206	1220	35	941	35	136	328	3079	24	6191	21548	28.73
C1	190	204	1116	33	919	30	104	376	3361	18	6351	25492	24.91
C12	187	208	1138	43	933	38	86	1071	3983	17	7704	22870	33.69
Tsh0	201	249	1055	24	846	46	99	317	1931	16	4784	20909	22.88
Tsh1	183	213	1007	28	798	35	60	326	1970	5	4625	19957	23.17
Tsh12	188	233	1096	50	858	47	57	1143	2951	10	6633	23179	28.62
Total	396	506	2953	102	2230	94	317	2091	8211	57	16957	75885	22.35

C0, C1 and C12 represent S. lycopersicum cold treatment for 0 h, 1 h and 12 h, respectively; Tsh0, Tsh1 and Tsh12 indicate S. habrochaites cold treatment for 0 h, 1 h and 12 h, respectively