Table 2.
List of the 100 most up-regulated genes in root hairs (RH) compared to non-root hair tissues (NRH).
| AGI | Annotation | RH (RPKM) | NRH (RPKM) | Fold-change (log2) |
|---|---|---|---|---|
| AT2G24980 | Proline-rich extensin-like family protein | 282.55 | 0.145177 | −10.9265 |
| AT5G06630 | proline-rich extensin-like family protein | 350.094 | 0.263724 | −10.3745 |
| AT1G12560 | ATEXP7, expansin A7 | 390.921 | 0.365196 | −10.064 |
| AT4G40090 | AGP3, arabinogalactan protein 3 | 1002.28 | 1.07251 | −9.86808 |
| AT3G62680 | ATPRP3, PRP3, proline-rich protein 3 | 419.939 | 0.453138 | −9.85601 |
| AT5G04960 | Plant invertase/pectin methylesterase inhibitor | 179.825 | 0.201765 | −9.7997 |
| AT3G09925 | Pollen Ole e 1 allergen and extensin family protein | 685.787 | 0.79408 | −9.75426 |
| AT4G25820 | ATXTH14 | 758.459 | 0.933845 | −9.66567 |
| AT5G06640 | Proline-rich extensin-like family protein | 300.574 | 0.375472 | −9.6448 |
| AT3G54590 | ATHRGP1, HRGP1, hydroxyproline-rich glycoprotein | 882.994 | 1.10396 | −9.64358 |
| AT5G67400 | RHS19, root hair specific 19 | 456.332 | 0.570824 | −9.64282 |
| AT4G13390 | Proline-rich extensin-like family protein | 346.903 | 0.436798 | −9.63335 |
| AT4G02270 | RHS13, root hair specific 13 | 828.721 | 1.12794 | −9.52106 |
| AT4G00680 | ADF8, actin depolymerizing factor 8 | 479.401 | 0.676228 | −9.46951 |
| AT1G62980 | ATEXP18, expansin A18 | 208.435 | 0.345746 | −9.23567 |
| AT5G57530 | AtXTH12 | 125.269 | 0.209592 | −9.22322 |
| AT5G35190 | Proline-rich extensin-like family protein | 467.479 | 0.808864 | −9.17479 |
| AT2G29620 | Unknown protein | 35.8692 | 0.067347 | −9.05692 |
| AT1G30870 | Peroxidase superfamily protein | 413.75 | 0.811178 | −8.99453 |
| AT1G12040 | LRX1, leucine-rich repeat/extensin 1 | 184.771 | 0.367391 | −8.97421 |
| AT5G05500 | Pollen Ole e 1 allergen and extensin family protein | 467.413 | 0.954079 | −8.93637 |
| AT5G11440 | CID5, IPD1, CTC-interacting domain 5 | 141.179 | 0.300056 | −8.87808 |
| AT1G48930 | AtGH9C1, GH9C1, glycosyl hydrolase 9C1 | 212.097 | 0.450867 | −8.87781 |
| AT1G54970 | ATPRP1, PRP1, RHS7, proline-rich protein 1 | 197.916 | 0.420925 | −8.87711 |
| AT2G41970 | Protein kinase superfamily protein | 232.38 | 0.551853 | −8.71799 |
| AT2G47540 | Pollen Ole e 1 allergen and extensin family protein | 213.419 | 0.513428 | −8.69931 |
| AT5G22410 | RHS18, root hair specific 18 | 106.322 | 0.292415 | −8.50621 |
| AT2G47360 | Unknown protein | 62.0735 | 0.184463 | −8.3945 |
| AT2G30670 | NAD(P)-binding Rossmann-fold superfamily protein | 112.11 | 0.339629 | −8.36674 |
| AT3G10710 | RHS12, root hair specific 12 | 57.5381 | 0.189001 | −8.24998 |
| AT2G45890 | ATROPGEF4, RHS11 | 101.066 | 0.368687 | −8.09869 |
| AT5G49270 | COBL9 | 80.4778 | 0.313345 | −8.00469 |
| AT5G22555 | Unknown protein | 196.529 | 0.860094 | −7.83603 |
| AT5G40860 | Unknown protein | 136.684 | 0.628081 | −7.76568 |
| AT3G54580 | Proline-rich extensin-like family protein | 1903.3 | 8.85952 | −7.74706 |
| AT4G09990 | Protein of unknown function (DUF579) | 189.187 | 0.903108 | −7.7107 |
| AT1G08090 | ATNRT2.1, nitrate transporter 2:1 | 52.9332 | 0.266549 | −7.63363 |
| AT3G60330 | AHA7, HA7, H(+)-ATPase 7 | 310.855 | 1.56648 | −7.63257 |
| AT2G33460 | RIC1, ROP-interactive CRIB motif-containing protein 1 | 58.361 | 0.294145 | −7.63233 |
| AT4G26010 | Peroxidase superfamily protein | 461.842 | 2.38604 | −7.59664 |
| AT3G07070 | Protein kinase superfamily protein | 39.4694 | 0.207821 | −7.56925 |
| AT2G46860 | AtPPa3, PPa3, pyrophosphorylase 3 | 111.429 | 0.593574 | −7.55249 |
| AT3G47040 | Glycosyl hydrolase family protein | 30.0456 | 0.168941 | −7.47449 |
| AT4G01110 | Unknown protein | 62.5961 | 0.387963 | −7.33401 |
| AT1G08990 | PGSIP5, plant glycogenin-like starch initiation protein 5 | 62.0058 | 0.388489 | −7.31838 |
| AT5G51270 | U-box domain-containing protein kinase family protein | 31.5351 | 0.198535 | −7.31142 |
| AT5G58010 | LRL3, LJRHL1-like 3 | 273.512 | 1.80494 | −7.24351 |
| AT3G49960 | Peroxidase superfamily protein | 159.373 | 1.06339 | −7.22759 |
| AT4G34580 | COW1, SRH1 | 218.104 | 1.47609 | −7.20709 |
| AT3G51350 | Eukaryotic aspartyl protease family protein | 38.8901 | 0.274518 | −7.14636 |
| AT4G38390 | RHS17, root hair specific 17 | 36.6331 | 0.260206 | −7.13735 |
| AT1G70460 | RHS10, root hair specific 10 | 88.1011 | 0.641957 | −7.10054 |
| AT5G62310 | IRE | 64.0072 | 0.516494 | −6.95334 |
| AT4G29180 | RHS16, root hair specific 16 | 55.3506 | 0.448309 | −6.94796 |
| AT5G17820 | Peroxidase superfamily protein | 1305.01 | 10.998 | −6.89067 |
| AT1G27740 | RSL4, root hair defective 6-like 4 | 254.49 | 2.16234 | −6.87888 |
| AT1G09170 | P-loop nucleoside triphosphate hydrolases | 24.029 | 0.205787 | −6.86748 |
| AT4G30320 | CAP superfamily protein | 89.776 | 0.843779 | −6.73332 |
| AT5G49870 | Mannose-binding lectin superfamily protein | 31.8792 | 0.309214 | −6.68786 |
| AT1G51860 | Leucine-rich repeat protein kinase family protein | 8.1714 | 0.0812391 | −6.65226 |
| AT5G65160 | tetratricopeptide repeat (TPR)-containing protein | 74.2567 | 0.744421 | −6.64026 |
| AT4G02830 | Unknown protein | 34.9084 | 0.352575 | −6.6295 |
| AT5G01280 | Proline-rich family protein (TAIR:AT3G09000.1) | 52.2871 | 0.534523 | −6.61206 |
| AT5G61550 | U-box domain-containing protein kinase family protein | 35.9846 | 0.372456 | −6.59417 |
| AT4G25220 | RHS15, root hair specific 15 | 24.1657 | 0.254417 | −6.56962 |
| AT2G17890 | CPK16, calcium-dependent protein kinase 16 | 8.41945 | 0.0946467 | −6.47503 |
| AT2G45750 | S-adenosyl-L-methionine-dependent methyltransferases | 142.026 | 1.61829 | −6.45554 |
| AT4G25090 | Riboflavin synthase-like superfamily protein | 62.3366 | 0.714573 | −6.44686 |
| AT1G07795 | Unknown protein | 47.4163 | 0.554259 | −6.41868 |
| AT4G34380 | Transducin/WD40 repeat-like superfamily protein | 8.24351 | 0.0984524 | −6.38769 |
| AT5G25810 | Tny, Integrase-type DNA-binding superfamily protein | 21.4022 | 0.257057 | −6.37953 |
| AT2G37820 | Cysteine/Histidine-rich C1 domain family protein | 17.8879 | 0.221005 | −6.33876 |
| AT1G34760 | GF14 OMICRON, GRF11, RHS5 | 50.7197 | 0.636707 | −6.31577 |
| AT4G25940 | ENTH/ANTH/VHS superfamily protein | 19.5987 | 0.246851 | −6.31097 |
| AT1G12550 | D-isomer specific 2-hydroxyacid dehydrogenase | 81.9584 | 1.03544 | −6.30658 |
| AT5G21080 | Uncharacterized protein | 30.2492 | 0.410728 | −6.20257 |
| AT5G65090 | BST1, DER4, MRH3, DNAse I-like superfamily protein | 41.273 | 0.593343 | −6.12019 |
| AT4G25110 | AtMC2, MC2, metacaspase 2 | 25.4734 | 0.366441 | −6.11927 |
| AT3G18450 | PLAC8 family protein | 26.2681 | 0.378257 | −6.1178 |
| AT1G01750 | ADF11, actin depolymerizing factor 11 | 723.49 | 10.7564 | −6.07171 |
| AT3G21340 | Leucine-rich repeat protein kinase family protein | 83.7404 | 1.26439 | −6.04941 |
| AT2G30660 | ATP-dependent caseinolytic (Clp) protease/crotonase | 24.6728 | 0.377473 | −6.0304 |
| AT1G10385 | Vps51/Vps67 (components of vesicular transport) protein | 8.71123 | 0.133365 | −6.02942 |
| AT4G14780 | Protein kinase superfamily protein | 11.7601 | 0.181057 | −6.02132 |
| AT3G54870 | ARK1, CAE1, MRH2 | 48.081 | 0.745398 | −6.01131 |
| AT3G47050 | Glycosyl hydrolase family protein | 10.9459 | 0.183671 | −5.89713 |
| AT2G38500 | 2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase | 91.0314 | 1.52791 | −5.89674 |
| AT3G07900 | O-fucosyltransferase family protein | 32.1397 | 0.546227 | −5.87871 |
| AT5G15600 | SP1L4, SPIRAL1-like4 | 148.905 | 2.58613 | −5.84745 |
| AT1G53680 | ATGSTU28, GSTU28, glutathione S-transferase TAU 28 | 304.142 | 5.34615 | −5.8301 |
| AT5G42785 | Unknown protein | 80.0565 | 1.42305 | −5.81396 |
| AT2G20030 | RING/U-box superfamily protein | 8.41905 | 0.150287 | −5.80787 |
| AT2G03360 | Glycosyltransferase family 61 protein | 6.24031 | 0.112152 | −5.79809 |
| AT5G12050 | Unknown protein | 184.136 | 3.34175 | −5.78402 |
| AT4G22217 | Arabidopsis defensin-like protein | 349.124 | 6.59131 | −5.72703 |
| AT4G21200 | ATGA2OX8, GA2OX8, gibberellin 2-oxidase 8 | 11.7754 | 0.22266 | −5.72479 |
| AT4G08450 | Disease resistance protein (TIR-NBS-LRR class) family | 7.34767 | 0.139961 | −5.71419 |
| AT1G18420 | Aluminum activated malate transporter family protein | 55.8597 | 1.08416 | −5.68716 |
| AT1G04280 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | 192.645 | 3.74287 | −5.68566 |
| AT2G17590 | Cysteine/Histidine-rich C1 domain family protein | 4.31448 | 0.0844839 | −5.67437 |