Table 3.

Distribution of RHE motif in the differentially expressed genes between root hairs and non-root tissues.

AGI	Annotation	Matching Positions		Hit pattern (5′–3′)	RH (RPKM)	NRH (RPKM)	Fold-change (log2)
		Start	End
RHEs WITHIN 3000 bp UPSTREAM THE START CODON
AT1G18460	Alpha/beta-hydrolases superfamily protein	2170	2154	AACGTGAACACCATGGA	142.28	60.44	−1.24
AT1G18470	Transmembrane fragile-X-F-associated protein	831	815	AACGTGAAACACATGTT	104.71	48.45	−1.11
AT2G31350	GLX2-5, glyoxalase 2-5	1950	1966	ACTATGTGGATCACGTT	163.77	15.16	−3.43
AT2G33320	Calcium-dependent lipid-binding (CaLB domain) family protein	2495	2479	AACGTGAAAAACATAGA	9.96	3.39	−1.56
AT3G45530	Cysteine/Histidine-rich C1 domain family protein	344	328	AACGTGAAAACCAAAAA	3.22	0.09	−5.1
RHEs WITHIN INTRONS
AT2G31350.1-1	GLX2-5, glyoxalase 2-5	161	145	TACGTGATGATCATTTT	163.77	15.16	−3.43
AT3G19050.1-19	POK2, phragmoplast orienting kinesin 2	25	41	TTCTTGTGCATCACGTA	0.47	4.6	3.29
AT4G03500.1-1	Ankyrin repeat family protein	856	840	TACGTGCTAAGCAAATT	16.3	2.45	−2.73
AT5G27680.1-8	RECQSIM, RECQ helicase SIM	72	56	TACGTGCTATTCAAATT	0.18	2.15	3.59
RHEs WITHIN CDS REGIONS
AT1G18460.1	Alpha/beta-Hydrolases superfamily protein	1435	1451	AACATGTGTTTCACGTT	142.28	60.44	−1.24
AT1G18470.1	Transmembrane Fragile-X-F-associated protein	466	482	TCCATGGTGTTCACGTT	104.71	48.45	−1.11
AT2G33320.1	Calcium-dependent lipid-binding (CaLB domain) family protein	254	270	TCCGTGATGTTCACGTT	9.96	3.39	−1.56
AT3G19050.1	POK2, phragmoplastorienting kinesin 2	2555	2571	ATTTTGAGCCGCACGAA	0.47	4.6	3.29
AT3G45530.1	Cysteine/Histidine-rich C1 domain family protein	1442	1458	TCCATGGAAGTCACGAT	3.22	0.09	−5.1
AT4G03500.1	Ankyrin repeat family protein	1723	1739	TTTATGGCTGGCACGTA	16.3	2.45	−2.73
AT5G27680.1	RECQSIM, RECQ helicase SIM	1241	1257	ATTTTGGTTCTCACGAT	0.18	2.15	3.59