Table 1.
List of the 35 genomes used in analysis of gene duplication and loss
| Species name | Kingdom | Phylum | Subphylum |
|---|---|---|---|
| Aspergillus fumigatus Af293 | Fungi | Ascomycota | Pezizomycotina |
| Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Pezizomycotina |
| Blumeria graminis f. sp. hordei DH14 | Fungi | Ascomycota | Pezizomycotina |
| Botrytis cinerea | Fungi | Ascomycota | Pezizomycotina |
| Coccidioides immitis RS | Fungi | Ascomycota | Pezizomycotina |
| Colletotrichum graminicola M1.001 | Fungi | Ascomycota | Pezizomycotina |
| Fusarium graminearum | Fungi | Ascomycota | Pezizomycotina |
| Fusarium oxysporum f. sp. lycopersici | Fungi | Ascomycota | Pezizomycotina |
| Histoplasma capsulatum H88 | Fungi | Ascomycota | Pezizomycotina |
| Magnaporthe oryzae 70-15 | Fungi | Ascomycota | Pezizomycotina |
| Mycosphaerella graminicola | Fungi | Ascomycota | Pezizomycotina |
| Neurospora crassa | Fungi | Ascomycota | Pezizomycotina |
| Podospora anserina | Fungi | Ascomycota | Pezizomycotina |
| Candida albicans SC5314 | Fungi | Ascomycota | Saccharomycotina |
| Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Saccharomycotina |
| Schizosaccharomyces pombe 132 | Fungi | Ascomycota | Taphrinomycotina |
| Heterobasidion irregulare TC 32-1 | Fungi | Basidiomycota | Agaricomycotina |
| Laccaria bicolor | Fungi | Basidiomycota | Agaricomycotina |
| Phanerochaete chrysosporium RP-78 | Fungi | Basidiomycota | Agaricomycotina |
| Serpula lacrymans S7.9 | Fungi | Basidiomycota | Agaricomycotina |
| Cryptococcus neoformans var. grubii H99 | Fungi | Basidiomycota | Agricomycotina |
| Melampsora laricis-populina 98AG31 | Fungi | Basidiomycota | Pucciniomycotina |
| Puccinia graminis f. sp. tritici | Fungi | Basidiomycota | Pucciniomycotina |
| Ustilago maydis 521 | Fungi | Basidiomycota | Ustilaginomycotina |
| Allomyces macrogynus | Fungi | Blastocladiomycota | N/D |
| Batrachochytrium dendrobatidis JAM81 | Fungi | Chytridiomycota | N/D |
| Encephalitozoon cuniculi | Fungi | Microsporodia | N/D |
| Phycomyces blakesleeanus NRRL1555 | Fungi | Zygomycota | Mucoromycotina |
| Rhizopus oryzae | Fungi | Zygomycota | Mucoromycotina |
| Phytophthora infestans | Chromista | Oomycota | Oomycotina |
| Arabidopsis thaliana | Viridiplantae | Streptophyta | N/D |
| Oryza sativa | Viridiplantae | Streptophyta | N/D |
| Drosophila melanogaster | Metazoa | Arthropoda | N/D |
| Caenorhabditis elegans | Metazoa | Nematoda | N/D |
| Homo sapiens | Metazoa | Chordata | Craniata |