Table 2.
Performance comparison of gene marker prediction methods.
| Gene Symbol | NONE | DEG | DEG+GRN | DEG+GRN+Pathway | DEG+GRN+Pathway+SNV |
|---|---|---|---|---|---|
| Relb | HIT | HIT | HIT | HIT | HIT |
| Nfkb2 | HIT | HIT | HIT | HIT | HIT |
| Tnfrsf9 | HIT | HIT | HIT | HIT | HIT |
| Tnfrsf21 | |||||
| Icos | HIT | HIT | HIT | HIT | HIT |
| Il2ra | HIT | HIT | HIT | HIT | HIT |
| Cysltr1 | HIT | HIT | |||
| Kit | HIT | HIT | HIT | HIT | HIT |
| Il1r2 | HIT | HIT | HIT | HIT | |
| Il13 | HIT | HIT | HIT | HIT | HIT |
| Il5 | HIT | HIT | HIT | HIT | HIT |
| Areg | HIT | HIT | HIT | HIT | HIT |
| Il1rl1 | HIT | HIT | HIT | ||
| Ccr8 | HIT | HIT | |||
| Tph1 | HIT | HIT | |||
| Htr1b | |||||
| Cd244 | HIT | HIT | HIT | HIT | |
| Lta | HIT | HIT | HIT | HIT | |
| Il10 | HIT | HIT | HIT | HIT | HIT |
| Tnf | HIT | HIT | HIT | HIT | HIT |
| Nfkbia | HIT | HIT | HIT | HIT | |
| Cdkn2b | HIT | HIT | HIT | HIT | HIT |
| Lif | HIT | HIT | HIT | HIT | HIT |
| Il2ra | HIT | HIT | HIT | HIT | HIT |
| Il9r | HIT | HIT | |||
| Il24 | |||||
| Num of Hits | 23 | 23 | 19 | 18 | 14 |
| Selected Candidates | 12298 | 2153 | 1184 | 478 | 343 |
| Precision | 0.002 | 0.011 | 0.016 | 0.038 | 0.041 |
| Recall | 0.885 | 0.885 | 0.731 | 0.692 | 0.538 |
| F-measure | 0.004 | 0.021 | 0.032 | 0.073 | 0.076 |
| Accuracy | 0.002 | 0.827 | 0.905 | 0.962 | 0.972 |