Table 3.
Regions of the genome that have different ROH45 frequencies across bull 1 and cow 2 populations
| ROH45 Difference (Maximum Location 4 ) | |||||
|---|---|---|---|---|---|
| Chr 3 | Largest Interval 4 | US vs AU Cows | US vs AU Bulls | US vs NZ Bulls | AU vs NZ Bulls |
| 1 | 6.5 -27.1 | - | - | 0.17 (14.4) | 0.10 (18.6) |
| 1 | 48.9-55.4 | - | - | 0.30 (51.3) | - |
| 1 | 61.2-77.9 | - | - | 0.31 (67.3) | 0.18 (67.3) |
| 2 | 80.2-94.1 | - | - | 0.17 (89.1) | - |
| 2 | 119.2-129.4 | - | 0.28 (123.9) | 0.42 (125.2 | 0.15 (128.4) |
| 3 | 1.7-10.5 | - | - | 0.21 (6.6) | 0.16 (6.6) |
| 3 | 39.1-46.0 | - | - | 0.29 (43.9) | 0.19 (43.9) |
| 3 | 46.7-62.0 | - | - | 0.22 (57.1) | 0.14 (57.1) |
| 4 | 8.0-12.2 | - | - | 0.24 (11.7) | - |
| 4 | 41.2-46.4 | 0.13 (45.0) | - | 0.16 (41.7) | 0.23 (41.7) |
| 4 | 80.7-86.7 | - | - | 0.14 (84.5) | - |
| 4 | 92.1-96.4 | 0.14 (96.3) | - | 0.20 (94.8) | - |
| 4 | 102.2-106.2 | - | - | 0.15 (103.4) | 0.13 (101.6) |
| 6 | 47.2-51.8 | 0.16 (47.8) | - | - | - |
| 6 | 55.6-61.1 | - | - | 0.14 (57.0) | |
| 6 | 102.2-106.2 | - | - | 0.20 (103.2) | 0.15 (105.6) |
| 7 | 19.9-34.6 | - | - | 0.35 (27.1) | 0.19 (28.0) |
| 7 | 49.0-58.4 | - | - | 0.22 (56.1) | - |
| 8 | 20.4-24.8 | - | - | 0.13 (21.6) | |
| 8 | 37.9-51.7 | - | - | 0.21 (41.6) | 0.12 (50.7) |
| 8 | 52.1-57.4 | - | - | 0.15 (53.2) | - |
| 9 | 57.0-74.3 | - | - | 0.14 (60.1) | 0.17 (62.3) |
| 9 | 86.8-92.3 | - | - | 0.12 (88.7) | - |
| 11 | 18.7-24.4 | - | - | 0.15 (21.9) | - |
| 12 | 22.9-29.4 | - | - | 0.19 (27.3) | - |
| 12 | 85.8-91.1 | - | - | 0.16 (86.7) | - |
| 13 | 59.3-67.3 | - | - | 0.24 (61.7) | - |
| 14 | 72.4-79.8 | - | - | 0.15 (75.6) | 0.12 (75.0) |
| 16 | 51.9-60.0 | - | - | 0.16 (56.3) | - |
| 17 | .1-4.2 | 0.16 (2.2) | - | - | - |
| 17 | 12.6-25.2 | - | - | 0.24 (20.4) | |
| 18 | 22.4-26.6 | - | - | 0.16 (22.5) | |
| 18 | 40.2-49.8 | - | - | 0.22 (46.6) | 0.13 (46.9) |
| 20 | 22.6-29.9 | 0.25 (25.4) | - | - | - |
| 20 | 42.2-58.7 | - | - | 0.23 (55.2) | - |
| 21 | 0.8-9.0 | - | - | 0.12 (8.3) | - |
| 21 | 25.2-33.6 | - | - | 0.14 (30.0) | - |
| 24 | 26.3-30.8 | - | - | 0.16 (30.1) | - |
| 26 | 9.8.2-23.6 | 0.15 (20.3) | - | 0.28 (17.4) | 0.15 (16.9) |
| 26 | 27.9-32.9 | - | - | 0.17 (30.2) | - |
1Number of bulls totaled 1810: 736 from United States (US); 306 from Australia (AU); 768 from New Zealand (NZ).
2Number of cows totaled 1933: 1047 from US; 886 from AU.
3Chr refers to chromosome.
4The largest interval and maximum location are in Megabases based on build UMD 3.1 (http://bovinegenome.org/cgi-bin/gbrowse/bovine_UMD31/).