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. 2015 Jun 2;11:1381–1393. doi: 10.2147/NDT.S84736

Table S1.

Genotype frequencies and allele frequencies of CDH13 SNPs in different ethnic populations

SNP Population Genotype frequencies
Allele frequencies
Genotype Freq Count Genotype Freq Count Genotype Freq Count Total Allele Freq Count Allele Freq Count Total
rs12925602 JPT G/G 0.708 80 A/G 0.265 30 A/A 0.027 3 113 G 0.841 190 A 0.159 36 226
CHB G/G 0.708 97 A/G 0.255 35 A/A 0.036 5 137 G 0.836 229 A 0.164 45 274
CHD G/G 0.642 70 A/G 0.339 37 A/A 0.018 2 109 G 0.812 177 A 0.188 41 218
GIH G/G 0.802 81 A/G 0.149 15 A/A 0.050 5 101 G 0.876 177 A 0.124 25 202
CEU G/G 0.850 96 A/G 0.142 16 A/A 0.009 1 113 G 0.920 208 A 0.080 18 226
TSI G/G 0.745 76 A/G 0.255 26 A/A 0.000 0 102 G 0.873 178 A 0.127 26 204
ASW G/G 0.750 42 A/G 0.250 14 A/A 0.000 0 56 G 0.875 98 A 0.125 14 112
LWK G/G 0.782 86 A/G 0.191 21 A/A 0.027 3 110 G 0.877 193 A 0.123 27 220
MKK G/G 0.833 130 A/G 0.160 25 A/A 0.006 1 156 G 0.913 285 A 0.087 27 312
YRI G/G 0.789 116 A/G 0.204 30 A/A 0.007 1 147 G 0.891 262 A 0.109 32 294
MEX G/G 0.741 43 A/G 0.224 13 A/A 0.034 2 58 G 0.853 99 A 0.147 17 116
rs7193788 JPT A/A 0.265 30 A/G 0.504 57 G/G 0.230 26 113 A 0.518 117 G 0.482 109 226
CHB A/A 0.285 39 A/G 0.445 61 G/G 0.270 37 137 A 0.507 139 G 0.493 135 274
CHD A/A 0.275 30 A/G 0.560 61 G/G 0.165 18 109 A 0.555 121 G 0.445 97 218
GIH A/A 0.584 59 A/G 0.366 37 G/G 0.050 5 101 A 0.767 155 G 0.233 47 202
CEU A/A 0.690 78 A/G 0.274 31 G/G 0.035 4 113 A 0.827 187 G 0.173 39 226
TSI A/A 0.784 80 A/G 0.186 19 G/G 0.029 3 102 A 0.877 179 G 0.123 25 204
ASW A/A 0.719 41 A/G 0.246 14 G/G 0.035 2 57 A 0.842 96 G 0.158 18 114
LWK A/A 0.691 76 A/G 0.273 30 G/G 0.036 4 110 A 0.827 182 G 0.173 38 220
MKK A/A 0.679 106 A/G 0.282 44 G/G 0.038 6 156 A 0.821 256 G 0.179 56 312
YRI A/A 0.796 117 A/G 0.190 28 G/G 0.014 2 147 A 0.891 262 G 0.109 32 294
MEX A/A 0.741 43 A/G 0.241 14 G/G 0.017 1 58 A 0.862 100 G 0.138 16 116
rs736719 JPT C/C 0.779 88 C/T 0.186 21 T/T 0.035 4 113 C 0.872 197 T 0.128 37 226
CHB C/C 0.679 93 C/T 0.277 38 T/T 0.044 6 133 C 0.818 224 T 0.182 50 274
CHD C/C 0.688 75 C/T 0.303 33 T/T 0.009 1 109 C 0.839 183 T 0.161 35 218
GIH C/C 0.762 77 C/T 0.228 23 T/T 0.010 1 101 C 0.876 177 T 0.124 25 202
CEU C/C 0.699 79 C/T 0.265 30 T/T 0.035 4 113 C 0.832 188 T 0.168 38 226
TSI C/C 0.784 80 C/T 0.186 19 T/T 0.029 3 102 C 0.877 179 T 0.123 25 204
ASW C/C 0.737 42 C/T 0.228 13 T/T 0.035 2 57 C 0.851 97 T 0.149 17 114
LWK C/C 0.700 77 C/T 0.264 29 T/T 0.036 4 110 C 0.832 183 T 0.168 37 220
MKK C/C 0.679 106 C/T 0.288 45 T/T 0.032 5 156 C 0.824 257 T 0.176 55 312
YRI C/C 0.796 117 C/T 0.190 28 T/T 0.014 2 147 C 0.891 262 T 0.109 32 294
MEX C/C 0.776 45 C/T 0.207 12 T/T 0.017 1 58 C 0.879 102 T 0.121 14 116
rs6565051 JPT G/G 0.133 15 A/G 0.469 53 A/A 0.398 45 113 G 0.367 83 A 0.633 143 226
CHB G/G 0.146 20 A/G 0.416 57 A/A 0.438 60 137 G 0.354 97 A 0.646 177 274
CHD G/G 0.148 16 A/G 0.463 50 A/A 0.389 42 108 G 0.380 82 A 0.620 134 216
GIH G/G 0.079 8 A/G 0.356 36 A/A 0.564 57 101 G 0.257 83 A 0.743 150 202
CEU G/G 0.071 8 A/G 0.354 40 A/A 0.575 65 113 G 0.248 56 A 0.752 170 226
TSI G/G 0.108 11 A/G 0.461 47 A/A 0.431 44 102 G 0.338 69 A 0.662 135 204
ASW G/G 0.088 5 A/G 0.421 24 A/A 0.491 28 57 G 0.298 34 A 0.702 80 114
LWK G/G 0.073 8 A/G 0.355 39 A/A 0.573 63 110 G 0.250 55 A 0.750 165 220
MKK G/G 0.052 8 A/G 0.426 66 A/A 0.523 81 155 G 0.265 82 A 0.735 228 310
YRI G/G 0.095 14 A/G 0.442 65 A/A 0.463 68 147 G 0.316 93 A 0.684 201 294
MEX G/G 0.140 8 A/G 0.509 29 A/A 0.351 20 57 G 0.395 45 A 0.605 69 114
rs7204454 JPT G/G 0.319 36 C/G 0.540 61 C/C 0.142 16 113 G 0.588 133 C 0.412 93 226
CHB G/G 0.382 52 C/G 0.441 60 C/C 0.176 24 136 G 0.603 164 C 0.397 108 272
CHD G/G 0.394 43 C/G 0.486 53 C/C 0.119 13 109 G 0.638 139 C 0.362 79 218
GIH G/G 0.158 16 C/G 0.406 41 C/C 0.436 44 101 G 0.361 73 C 0.639 129 202
CEU G/G 0.100 11 C/G 0.436 48 C/C 0.464 51 110 G 0.318 70 C 0.682 150 220
TSI G/G 0.147 15 C/G 0.598 61 C/C 0.255 26 102 G 0.446 91 C 0.554 113 204
ASW G/G 0.263 15 C/G 0.439 25 C/C 0.298 17 57 G 0.482 55 C 0.518 59 114
LWK G/G 0.164 18 C/G 0.536 59 C/C 0.300 33 110 G 0.432 95 C 0.568 125 220
MKK G/G 0.141 22 C/G 0.449 70 C/C 0.410 64 156 G 0.365 114 C 0.635 198 312
YRI G/G 0.284 40 C/G 0.504 71 C/C 0.213 30 141 G 0.535 151 C 0.465 131 282
MEX G/G 0.310 18 C/G 0.500 29 C/C 0.190 11 58 G 0.560 65 C 0.440 51 116
rs8057927 JPT T/T 0.478 54 C/T 0.425 48 C/C 0.097 11 113 T 0.690 156 C 0.310 70 226
CHB T/T 0.478 65 C/T 0.412 56 C/C 0.110 15 136 T 0.684 186 C 0.316 86 272
CHD T/T 0.514 56 C/T 0.394 43 C/C 0.092 10 109 T 0.711 155 C 0.289 63 218
GIH T/T 0.901 91 C/T 0.089 9 C/C 0.010 1 101 T 0.946 191 C 0.054 11 202
CEU T/T 0.876 99 C/T 0.124 14 C/C 0 0 113 T 0.938 212 C 0.062 14 226
TSI T/T 0.853 87 C/T 0.147 15 C/C 0 0 102 T 0.926 189 C 0.074 15 204
ASW T/T 0.632 36 C/T 0.351 20 C/C 0.018 1 57 T 0.807 92 C 0.193 22 114
LWK T/T 0.620 67 C/T 0.324 35 C/C 0.056 6 108 T 0.782 169 C 0.218 47 216
MKK T/T 0.692 108 C/T 0.250 39 C/C 0.058 9 156 T 0.817 255 C 0.183 57 312
YRI T/T 0.623 91 C/T 0.336 49 C/C 0.041 6 146 T 0.791 231 C 0.209 61 292
MEX T/T 0.807 46 C/T 0.175 10 C/C 0.018 1 57 T 0.895 102 C 0.105 12 114
rs8049308 JPT T/T 0.455 20 C/T 0.500 22 C/C 0.045 2 44 T 0.705 62 C 0.295 26 88
CHB T/T 0.364 16 C/T 0.477 21 C/C 0.159 7 44 T 0.602 53 C 0.398 35 88
CEU T/T 0.650 39 C/T 0.333 20 C/C 0.017 1 60 T 0.817 98 C 0.183 22 120
YRI T/T 0.583 35 C/T 0.383 23 C/C 0.033 2 60 T 0.775 93 C 0.225 27 120

Note: Genotype frequencies and allele frequencies data were determined by the HapMap database (HapMap data release 28, Phase 2+3, August 10), on NCBI B36 assembly, dbSNP b126 (http://hapmap.ncbi.nlm.nih.gov/).

Abbreviations: ASW, African ancestry in southwest USA; CDH13, cadherin13; CEU, residents of UT, USA with Northern and Western European ancestry, from the Centre d’Etude du Polymorphisme Humain collection; CHB, Han Chinese in Beijing, People’s Republic of China; CHD, Chinese in metropolitan Denver, CO, USA; freq, frequency; GIH, Gujarati Indians in Houston, TX, USA; JPT, Japanese in Tokyo, Japan; LWK, Luhya in Webuye, Kenya; MEX, Mexican ancestry in Los Angeles, CA, USA; MKK, Maasai in Kinyawa, Kenya; SNP, single nucleotide polymorphism; TSI, Tuscan in Italy; YRI, Yoruba in Ibadan, Nigeria.