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. 2015 Jun 2;11:1381–1393. doi: 10.2147/NDT.S84736

Table S2.

Haplotype frequencies of CDH13 SNPs (rs12925602–rs7204454) in different ethnic populations1

JPT CHB CHD GIH CEU TSI ASW LWK MKK YRI MEX
GACGG 0.355 0.351 0.347 0.233 0.244 0.335 0.286 0.289 0.231 0.287 0.394
CGCAC 0.285 0.220 0.206 0.085
AACAG 0.151 0.161 0.194 0.119 0.081 0.114 0.127 0.106 0.091 0.130 0.154
GGTAC 0.128 0.179 0.135 0.142 0.162 0.114 0.103 0.167 0.154 0.087 0.106
GGCAG 0.070 0.077 0.076
GGCGG 0.012 0.006 0.018 0.006
GACAG 0.006 0.071 0.067 0.024 0.126 0.010
AACGG 0.006 0.017
GGCGC 0.012
AGCAG 0.006
AACAC 0.004
GACGC 0.017 0.006 0.008 0.004
GGCAC 0.009 0.008 0.003 0.019
AGTAC 0.008
GGTGG 0.014
GGTGC 0.006 0.014 0.022 0.010
GACAC 0.006 0.392 0.500 0.415 0.389 0.367 0.469 0.343 0.308

Note: Haplotype frequencies data were determined by the Haploview software program (version 4.2; Broad Institute, Cambridge, MA, USA) (http://www.broad.mit.edu/mpg/haploview/).

Abbreviations: ASW, African ancestry in southwest USA; CDH13, cadherin13; CEU, residents of UT, USA with Northern and Western European ancestry, from the Centre d’Etude du Polymorphisme Humain collection; CHB, Han Chinese in Beijing, People’s Republic of China; CHD, Chinese in metropolitan Denver, CO, USA; GIH, Gujarati Indians in Houston, TX, USA; JPT, Japanese in Tokyo, Japan; LWK, Luhya in Webuye, Kenya; MEX, Mexican ancestry in Los Angeles, CA, USA; MKK, Maasai in Kinyawa, Kenya; SNPs, single nucleotide polymorphisms; TSI, Tuscan in Italy; YRI, Yoruba in Ibadan, Nigeria.