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. 2015 May 23;71(Pt 6):1360–1372. doi: 10.1107/S1399004715006616

Table 2. Three-dimensional alignment of AcdDPN7 with deposited dehydrogenases using PDBeFold (Krissinel Henrick, 2004 ▶).

PDB code R.m.s.d. () Sequence identity (%) Position 1 Position 2 Position 3 Activity Source Reference
5af7 n/a n/a Arg84 Gln246 Gly366 3SP-CoA desulfinase Advenella mimigardefordensis This work
1jqi 1.156 33 Val90 Gly247 Glu368 Short-chain acyl-CoA dehydrogenase Rattus norvegicus Battaile et al. (2002 ▶)
3pfd 1.272 38 Leu95 Thr251 Glu373 Acyl-CoA dehydrogenase Mycobacterium thermoresistibile Abendroth et al. (2011 ▶)
2jif 1.293 33 Val137 Gly293 Glu414 Short branched-chain acyl-CoA dehydrogenase Homo sapiens A. C. W. Pike et al. (unpublished work)
1rx0 1.320 32 Ala99 Gly254 Glu376 Isobutyryl-CoA dehydrogenase Homo sapiens Battaile et al. (2004 ▶)
4kto 1.321 30 Leu90 Glu247 Ala368 Putative isovaleryl-CoA dehydrogenase Sinorhizobium meliloti New York Structural Genomics Research Consortium (unpublished work)
2dvl 1.323 34 Val83 Gly235 Glu356 Uncharacterized Thermus thermophilus RIKEN Structural Genomics/Proteomics Initiative (unpublished work)
3mdd 1.333 33 Thr96 Thr255 Glu376 Medium-chain acyl-CoA dehydrogenase Sus scrofa Kim et al. (1993 ▶)
4n5f 1.347 34 Thr85 Gly242 Glu363 Putative acyl-CoA dehydrogenase Burkholderia cenocepacia J2315 Seattle Structural Genomics Center for Infectious Disease (unpublished work)
1ws9 1.348 35 Leu87 Gly248 Glu369 Uncharacterized Thermus thermophilus HB8 RIKEN Structural Genomics/Proteomics Initiative (unpublished work)
1ivh 1.365 32 leu95 Glu254 Ala375 Isovaleryl-CoA dehydrogenase Homo sapiens Tiffany et al. (1997 ▶)
1buc 1.371 33 Ile88 Gly246 Glu367 Butyryl-CoA dehydrogenase Megasphaera elsdenii Djordjevic et al. (1995 ▶)
1ukw 1.418 36 Thr116 Thr272 Glu393 Medium-chain acyl-CoA dehydrogenase Thermus thermophilus HB8 RIKEN Structural Genomics/Proteomics Initiative (unpublished work)
3mpi 1.507 29 Val88 Thr245 Glu367 Glutaryl-CoA dehydrogenase Desulfococcus multivorans Wischgoll et al. (2010 ▶)
1sir 1.550 22 Ser95 Ala249 Glu370 Glutaryl-CoA dehydrogenase Homo sapiens Fu et al. (2004 ▶)
3swo 1.553 22 Ser103 Ala254 Glu375 Glutaryl-CoA dehydrogenase Mycobacterium smegmatis Baugh et al. (2015 ▶)
3eom 1.668 20 Ser98 Ala253 Glu374 Glutaryl-CoA dehydrogenase Burkholderia pseudomallei Begley et al. (2011 ▶)