Table 3.
Primary functional classification on differentially expressed genes of Dajiao with fold changes > or < 2-fold
| Gene_id | RPKM Dajiao 0 h | RPKM Dajiao 3 h | RPKM Dajiao 6 h | log2Fold Change 3 h | log2Fold Change 6 h | Gene name |
|---|---|---|---|---|---|---|
| Regulation of transcription | ||||||
| GSMUA_Achr8G25220_001 | 0.00 | 74.93 | Inf | sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 | ||
| GSMUA_Achr6G15840_001 | 0.00 | 244.92 | Inf | sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 | ||
| GSMUA_Achr7G21780_001 | 3.92 | 134.30 | 5.08 | sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 | ||
| GSMUA_Achr5G07590_001 | 3.49 | 98.07 | 4.79 | sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 | ||
| GSMUA_Achr6G32330_001 | 13.18 | 144.11 | 3.35 | sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 | ||
| GSMUA_Achr7G06910_001 | 92.07 | 2467.93 | 4.67 | sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 | ||
| GSMUA_Achr5G21050_001 | 8.88 | 112.43 | 3.54 | sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 | ||
| GSMUA_Achr2G07300_001 | 89.60 | 623.19 | 2.69 | sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1 | ||
| GSMUA_Achr8G06870_001 | 16.66 | 182.33 | 3.38 | sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 | ||
| GSMUA_Achr4G33270_001 | 16.25 | 187.60 | 3.42 | sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 | ||
| GSMUA_Achr3G01650_001 | 31.65 | 237.25 | 2.80 | sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 | ||
| GSMUA_Achr7G11200_001 | 23.57 | 226.28 | 3.11 | sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 | ||
| GSMUA_Achr8G21550_001 | 37.31 | 181.43 | 228.12 | 2.24 | 2.50 | sp|Q9SLH0|EIL1_ARATH ETHYLENE INSENSITIVE 3-like 1 protein |
| GSMUA_Achr9G17080_001 | 176.04 | 810.19 | 2.09 | sp|Q9SLH0|EIL1_ARATH ETHYLENE INSENSITIVE 3-like 1 protein | ||
| GSMUA_Achr6G32910_001 | 61.08 | 345.11 | 352.14 | 2.46 | 2.41 | sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 |
| GSMUA_Achr11G02890_001 | 407.44 | 97.21 | −2.17 | sp|A6MMN9|RPOA_DIOEL DNA-directed RNA polymerase subunit alpha | ||
| GSMUA_Achr3G04360_001 | 195.09 | 7.20 | −4.82 | sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 | ||
| Response to stress | ||||||
| GSMUA_Achr7G05900_001 | 4.55 | 474.74 | 496.55 | 6.76 | 6.74 | sp|Q9LWV3|DRE1D_ORYSJ Dehydration-responsive element-binding protein 1D |
| GSMUA_Achr6G14750_001 | 1.82 | 97.73 | 5.72 | sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 | ||
| GSMUA_Achr5G07340_001 | 1.61 | 80.13 | 5.62 | sp|Q10MX1|P2C32_ORYSJ Probable protein phosphatase 2C 32 | ||
| GSMUA_Achr6G13020_001 | 9.58 | 343.69 | 4.98 | sp|Q8LGD5|MKS1_ARATH Protein MKS1 | ||
| GSMUA_Achr2G13410_001 | 16.68 | 246.83 | 243.05 | 3.87 | 3.76 | sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 |
| GSMUA_Achr3G11070_001 | 208.08 | 1667.24 | 2.91 | sp|Q84PD8|SAP11_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 11 | ||
| GSMUA_Achr10G22580_001 | 46.34 | 325.56 | 2.74 | sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 | ||
| GSMUA_Achr7G27650_001 | 234.49 | 1072.10 | 2.10 | sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A | ||
| GSMUA_Achr7G00180_001 | 656.47 | 2428.04 | 1.76 | sp|F6H7K5|THI42_VITVI Thiamine thiazole synthase 2, chloroplastic | ||
| GSMUA_Achr8G20530_001 | 547.88 | 145.12 | −2.04 | sp|P11432|ELI_PEA Early light-induced protein, chloroplastic | ||
| GSMUA_Achr7G20770_001 | 681.33 | 129.38 | −2.53 | sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 | ||
| GSMUA_Achr3G03820_001 | 180.03 | 20.24 | −3.28 | sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 | ||
| GSMUA_Achr1G17220_001 | 758.94 | 19.48 | −5.40 | sp|Q9SW93|SCA_LILLO Stigma/stylar cysteine-rich adhesin | ||
| Protein modification | ||||||
| GSMUA_Achr9G08750_001 | 21.54 | 308.06 | 3.74 | sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 | ||
| GSMUA_Achr6G25670_001 | 128.52 | 845.34 | 1563.67 | 2.68 | 3.48 | sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 |
| GSMUA_Achr7G01430_001 | 52.60 | 429.81 | 2.95 | sp|P05332|YP20_BACLI Uncharacterized N-acetyltransferase p20 | ||
| GSMUA_Achr2G13700_001 | 15.09 | 110.79 | 2.79 | sp|Q10469|MGAT2_HUMAN Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | ||
| GSMUA_Achr6G18960_001 | 455.83 | 2228.34 | 2.19 | sp|P0CH33|UBQ11_ARATH Polyubiquitin 11 | ||
| Signal transduction | ||||||
| GSMUA_Achr9G04780_001 | 0.00 | 111.31 | Inf | sp|O22932|CIPKB_ARATH CBL-interacting serine/threonine-protein kinase 11 | ||
| GSMUA_Achr4G16550_001 | 13.05 | 123.18 | 3.19 | sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12 | ||
| GSMUA_Achr1G03980_001 | 58.82 | 544.78 | 3.15 | sp|Q9ZPX9|KIC_ARATH Calcium-binding protein KIC | ||
| GSMUA_Achr3G23000_001 | 66.66 | 705.10 | 3.41 | sp|Q9ZPX9|KIC_ARATH Calcium-binding protein KIC | ||
| GSMUA_Achr6G35120_001 | 299.39 | 1905.08 | 2.58 | sp|Q9LNE7|CML7_ARATH Calmodulin-like protein 7 | ||
| Cell wall organization and biogenesis | ||||||
| GSMUA_Achr7G21070_001 | 12.21 | 113.07 | 3.14 | sp|Q67VS7|CSLA9_ORYSJ Probable mannan synthase 9 | ||
| GSMUA_Achr6G05390_001 | 50.30 | 294.18 | 2.46 | sp|Q9LR44|U75B1_ARATH UDP-glycosyltransferase 75B1 | ||
| GSMUA_Achr3G05220_001 | 0.00 | 108.92 | Inf | sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23 | ||
| GSMUA_Achr3G26220_001 | 349.74 | 19.19 | −4.32 | sp|Q8LER3|XTH7_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 7 | ||
| GSMUA_Achr7G22100_001 | 376.14 | 6.12 | −6.08 | sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 | ||
| Transport | ||||||
| GSMUA_Achr10G25070_001 | 42.74 | 561.50 | 3.66 | sp|Q9CR62|M2OM_MOUSE Mitochondrial 2-oxoglutarate/malate carrier protein | ||
| GSMUA_Achr7G16570_001 | 66.35 | 290.42 | 2.03 | sp|P46032|PTR2_ARATH Peptide transporter PTR2 | ||
| GSMUA_Achr1G22700_001 | 334.68 | 1346.56 | 1.93 | sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 | ||
| Nucleosome assembly | ||||||
| GSMUA_Achr1G07160_001 | 64.61 | 491.53 | 2.84 | sp|P0CG89|H4_SOYBN Histone H4 | ||
| GSMUA_Achr7G12120_001 | 443.53 | 1635.08 | 1.76 | sp|Q9M5W4|H1_EUPES Histone H1 | ||
| Cell redox homeostasis | ||||||
| GSMUA_Achr3G25160_001 | 0.00 | 53.07 | Inf | sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 | ||
| Iron-sulfur cluster assembly | ||||||
| GSMUA_Achr9G07610_001 | 0.00 | 343.42 | 275.72 | Inf | Inf | sp|Q6FJ73|CIAO1_CANGA Probable cytosolic iron-sulfur protein assembly protein 1 |
| Proteolysis | ||||||
| GSMUA_Achr11G04410_001 | 1.46 | 120.93 | 6.34 | sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 | ||
| Oxidation reduction | ||||||
| GSMUA_Achr7G26580_001 | 83.33 | 882.49 | 1084.18 | 3.35 | 3.57 | sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase |
| RNA modification | ||||||
| GSMUA_Achr4G11450_001 | 61.95 | 416.78 | 2.64 | sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 | ||
| Copper ion homeostasis | ||||||
| GSMUA_Achr3G16210_001 | 9685.89 | 33776.00 | 1.72 | sp|Q40256|MT3_MUSAC Metallothionein-like protein type 3 | ||
| Photosynthesis and photorespiration | ||||||
| GSMUA_Achr10G19930_001 | 210.99 | 18.46 | −3.62 | sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chain, chloroplastic | ||
| Response to sucrose stimulus | ||||||
| GSMUA_Achr11G11670_001 | 233.57 | 3.50 | −6.15 | sp|Q9LZP9|CP122_ARATH Calvin cycle protein CP12-2, chloroplastic | ||
| Unknown | ||||||
| GSMUA_Achr2G22400_001 | 0.00 | 59.28 | Inf | Putative uncharacterized protein | ||
| GSMUA_Achr10G24780_001 | 2.98 | 136.75 | 5.50 | Putative uncharacterized protein | ||
| GSMUA_Achr6G10300_001 | 12.59 | 230.91 | 4.17 | Putative uncharacterized protein | ||
| GSMUA_Achr2G22290_001 | 28.69 | 317.86 | 3.39 | Putative uncharacterized protein | ||
| GSMUA_Achr5G01760_001 | 40.45 | 432.42 | 3.35 | Putative uncharacterized protein | ||
| GSMUA_Achr3G28910_001 | 263.62 | 1904.50 | 2.75 | Putative uncharacterized protein | ||
| GSMUA_Achr6G16830_001 | 61.64 | 364.03 | 2.45 | Putative uncharacterized protein | ||
| GSMUA_Achr8G05250_001 | 163.34 | 933.13 | 2.41 | Putative uncharacterized protein | ||
| GSMUA_Achr4G24680_001 | 409.42 | 52.57 | −3.08 | Putative uncharacterized protein | ||
| GSMUA_Achr8G30530_001 | 245.64 | 28.47 | −3.20 | Putative uncharacterized protein | ||
| GSMUA_Achr6G01490_001 | 158.51 | 11.52 | −3.90 | Putative uncharacterized protein | ||
| GSMUA_Achr9G12290_001 | 65.93 | 0.00 | -Inf | Putative uncharacterized protein | ||
| GSMUA_Achr9G26820_001 | 65.88 | 0.00 | -Inf | Putative uncharacterized protein |