Table 3.
Rabema benchmark results (normalized found interval) for 1 million 100 bp real reads of caenorhabditis elegans
| Mapper | Time | Benchmark category | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| [min:sec] | All[%] | All-best[%] | Any-best[%] | ||||||||||
| Masai | 3:02 | 99.93 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.92 | 99.67 | 98.14 | 99.98 | 99.93 | 99.78 | 99.99 | 99.95 | 99.89 | |||||
| Hobbes 2 | 2:01 | 99.94 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.99 | 99.86 | 98.18 | 99.99 | 99.96 | 99.72 | 99.99 | 99.99 | 99.97 | |||||
| mrFAST | 3:40 | 98.89 | 100.00 | 100.00 | 100.00 | 99.95 | 100.00 | 100.00 | 100.00 | 99.96 | 100.00 | 100.00 | 100.00 |
| 99.99 | 99.99 | 96.50 | 99.99 | 100.00 | 93.43 | 99.99 | 100.00 | 93.89 | |||||
| RazerS 3 a | 7:18 | 99.95 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.99 | 99.79 | 98.64 | 99.99 | 99.89 | 99.61 | 99.99 | 99.95 | 99.84 | |||||
| RazerS 3 | 7:53 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
| 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | |||||
| Yara | 1:25 | — | — | — | — | — | — | — | — | — | — | — | — |
| — | — | — | — | — | — | — | — | — | |||||
| BitMapper | 0:32 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 100.00 | 99.99 | 99.98 | 100.00 | 99.99 | 99.98 | 100.00 | 99.99 | 99.98 | |||||
RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)