Table 4.
Rabema benchmark results (normalized found interval) for 1 million 101 bp real reads of arabidopsis thaliana
| Mapper | Time | Benchmark category | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| [min:sec] | All[%] | All-best[%] | Any-best[%] | ||||||||||
| Masai | 3:05 | 99.96 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.97 | 99.96 | 99.25 | 99.98 | 99.96 | 99.27 | 99.98 | 99.96 | 99.53 | |||||
| Hobbes 2 | 1:52 | 99.92 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 |
| 99.97 | 99.88 | 98.72 | 99.98 | 99.99 | 99.64 | 99.99 | 100.00 | 99.98 | |||||
| mrFAST | 2:30 | 99.88 | 100.00 | 100.00 | 100.00 | 99.98 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.99 | 99.99 | 97.94 | 99.99 | 100.00 | 97.70 | 100.00 | 100.00 | 98.50 | |||||
| RazerS 3 a | 8:30 | 99.88 | 100.00 | 100.00 | 100.00 | 99.98 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| 99.99 | 99.70 | 98.12 | 99.98 | 99.70 | 98.63 | 99.99 | 99.84 | 99.27 | |||||
| RazerS 3 | 9:06 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
| 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | |||||
| Yara | 1:25 | — | — | — | — | — | — | — | — | — | — | — | — |
| — | — | — | — | — | — | — | — | — | |||||
| BitMapper | 0:32 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 |
| 99.98 | 100.00 | 99.99 | 99.99 | 100.00 | 99.99 | 99.99 | 100.00 | 99.99 | |||||
RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)