Table 7.
Results for mapping 10 million 300bp single-end reads against caenorhabditis elegans and arabidopsis thaliana
| Caenorhabditis elegans | Arabidopsis thaliana | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Mapper | Time [min:sec] | Peak | Mapping | Mapped | Time [min:sec] | Peak | Mapping | Mapped | ||||
| 1 thr | 8 thr | memory | sites[million] | reads[%] | 1 thr | 8 thr | memory | sites[million] | reads[%] | |||
| Masai | 48:54 | — | 11.5GB | 17.44 | 99.9894 | 46:26 | — | 11.8GB | 14.83 | 99.9884 | ||
| Hobbes 2 | 66:38 | 13:12 | 0.9GB | 2.14 | 0.5327 | 64:25 | 12:50 | 1.0GB | 0.01 | 0.0219 | ||
| mrFAST | 80:56 | — | 9.9GB | 16.71 | 96.1888 | 47:00 | — | 10.0GB | 14.27 | 96.2356 | ||
| RazerS 3 a | 195:07 | 182:34 | 11.9GB | 17.43 | 99.9894 | 172:21 | 155:48 | 12.0GB | 14.82 | 99.9884 | ||
| RazerS 3 | 209:30 | 185:29 | 12.6GB | 17.44 | 99.9894 | 185:05 | 160:02 | 12.0GB | 14.83 | 99.9884 | ||
| Yara | 34:20 | 7:43 | 2.1GB | 17.33 | 99.9894 | 29:44 | 6:34 | 2.1GB | 14.72 | 99.9884 | ||
| BitMapper | 12:26 | 4:57 | 10.1GB | 17.43 | 99.9894 | 12:10 | 4:55 | 10.2GB | 14.83 | 99.9884 | ||
RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)