Table 8.
Results for mapping 10 million paired-end reads
| Human | Caenorhabditis elegans | Arabidopsis thaliana | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Mapper | Time [min:sec] | Peak | Mapped | Time [min:sec] | Peak | Mapped | Time [min:sec] | Peak | Mapped | |||||
| 1 thr | 8 thr | memory | pairs[%] | 1 thr | 8 thr | memory | pairs[%] | 1 thr | 8 thr | memory | pairs[%] | |||
| Masai | 464:07 | — | 16.8GB | 84.8984 | 31:07 | — | 11.3GB | 65.8674 | 29:40 | — | 11.6GB | 64.9149 | ||
| Hobbes 2 | 439:05 | 105:29 | 14.6GB | 87.3945 | 80:04 | 22:41 | 0.9GB | 67.1739 | 23:59 | 6:21 | 1.0GB | 68.1224 | ||
| RazerS 3 a | — | — | >24GB | — | 61:15 | 47:11 | 16.4GB | 67.1841 | 51:25 | 41:31 | 14.9GB | 68.1250 | ||
| RazerS 3 | — | — | >24GB | — | 66:28 | 50:13 | 17.4GB | 67.1894 | 55:33 | 42:38 | 17.1GB | 68.1473 | ||
| Yara | 489:58 | 117:40 | 13.2GB | 87.1614 | 23:43 | 5:47 | 2.0GB | 67.1058 | 28:09 | 6:52 | 2.2GB | 66.8150 | ||
| BitMapper | 177:47 | 39:39 | 21.5GB | 87.4233 | 11:16 | 3:15 | 8.0GB | 67.1883 | 6:47 | 2:20 | 8.1GB | 68.1500 | ||
RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)