Table 5.
Expression of putative genes in secoiridoid biosynthesis pathways.
| Gene Name | Unigene | RPKMs in Leaf | RPKMs in Root |
|---|---|---|---|
| GPPS1 * | comp57663_c0 | 47.61 | 0.04 |
| GPPS2 | comp79818_c0 | 53.25 | 8.76 |
| GES * | comp45416_c0 | 66.71 | 0.06 |
| G10H | comp95013_c1 | 304.45 | 1075.00 |
| G10H * | comp59018_c0 | 128.37 | 0.15 |
| G10H | comp67411_c0 | 6.01 | 10.68 |
| G10H | comp84881_c0 | 41.33 | 89.38 |
| G10H | comp74631_c0 | 31.33 | 70.85 |
| G10H | comp64598_c0 | 15.04 | 42.75 |
| G10H | comp42518_c0 | 3.07 | 13.76 |
| G10H | comp89824_c0 | 14.26 | 28.73 |
| G10H | comp67522_c0 | 11.48 | 15.46 |
| G10H | comp92644_c0 | 164.26 | 389.80 |
| G10H | comp67745_c0 | 13.73 | 25.95 |
| G10H | comp77398_c0 | 4.41 | 7.13 |
| G10H | comp51247_c0 | 0.00 | 2.77 |
| G10H | comp67165_c0 | 16.78 | 27.36 |
| G10H | comp67799_c0 | 0.00 | 0.90 |
| G10H | comp63189_c0 | 0.10 | 1.55 |
| G10H | comp76700_c0 | 1.03 | 2.28 |
| G10H | comp42518_c0 | 3.07 | 13.76 |
| 8HGO | comp93669_c0 | 161.97 | 2.80 |
| 8HGO | comp53753_c1 | 81.29 | 1.37 |
| 8HGO | comp53753_c2 | 121.86 | 0.92 |
| 8HGO | comp76718_c0 | 65.89 | 77.05 |
| 8HGO | comp90961_c0 | 5.52 | 2.34 |
| 8HGO | comp92998_c0 | 219.14 | 245.73 |
| SLS | comp94595_c0 | 504.62 | 20.96 |
| SLS | comp94064_c5 | 368.11 | 50.11 |
| SLS | comp84511_c0 | 27.90 | 35.43 |
| SLS | comp81016_c0 | 0.59 | 0.46 |
| SLS | comp85876_c0 | 318.25 | 345.13 |
| SLS | comp67629_c0 | 2.53 | 3.00 |
| SLS | comp54852_c0 | 0.08 | 1.74 |
| SLS | comp55055_c0 | 0.56 | 2.47 |
| SLS | comp61732_c0 | 0.75 | 2.06 |
| SLS | comp93282_c0 | 143.24 | 185.59 |
| SLS | comp281520_c0 | 0.49 | 0.75 |
| SLS | comp87446_c0 | 22.83 | 39.78 |
| SLS | comp41718_c0 | 0.09 | 4.01 |
| SLS | comp167742_c0 | 0.43 | 1.74 |
| SLS | comp94107_c0 | 121.99 | 222.06 |
| SLS | comp49781_c0 | 0.00 | 0.70 |
| SLS | comp90874_c0 | 14.95 | 24.36 |
| SLS | comp212851_c0 | 1.23 | 0.83 |
| SLS | comp73409_c0 | 0.00 | 0.72 |
| SLS | comp87446_c0 | 22.83 | 39.78 |
| SLS | comp73685_c0 | 0.95 | 2.11 |
| SLS | comp76988_c0 | 4.19 | 4.57 |
| SLS | comp103080_c0 | 4.73 | 6.98 |
| SLS | comp81659_c0 | 3.97 | 6.59 |
| IS | comp85292_c0 | 64.52 | 0.00 |
| IO | comp84741_c0 | 361.42 | 0.00 |
| 7-DLGT | comp82018_c0 | 65.59 | 0.00 |
| 7-DLH * | comp94064_c5 | 368.11 | 50.11 |
| CYP1 | comp84741_c0 | 361.42 | 0.00 |
| CYP2 | comp89478_c0 | 33.35 | 2.23 |
| CYP3 | comp108293_c0 | 10.24 | 0.09 |
| CYP4 * | comp92783_c1 | 27.39 | 8.86 |
| CYP5 | comp80146_c0 | 17.02 | 3.45 |
| CYP6 | comp83496_c0 | 46.67 | 160.59 |
| CYP7 | comp94595_c0 | 504.62 | 20.96 |
| CYP8 * | comp97650_c0 | 29.44 | 2.77 |
| CYP9 | comp90225_c0 | 16.82 | 1.16 |
| CYP10 * | comp80525_c0 | 0.06 | 15.35 |
| CYP11 | comp92026_c0 | 60.41 | 4.19 |
| CYP12 | comp68870_c0 | 3.04 | 31.70 |
| CYP13 | comp85931_c0 | 59.63 | 6.58 |
| CYP14 | comp79921_c0 | 75.72 | 33.66 |
| CYP15 * | comp80492_c0 | 19.18 | 6.02 |
| CYP16 * | comp95479_c0 | 99.29 | 14.68 |
| CYP17 | comp90874_c0 | 14.95 | 24.36 |
* These genes were selected for qRT-PCR.