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. 2015 Apr 27;22(3):193–203. doi: 10.1093/dnares/dsv004

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© The Author 2015. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — SNP-index graphs depicting the HSB (high seed weight bulk), LSW (low seed weight bulk) and Δ (SNP-index) graphs generated from QTL-seq study. The X-axis denotes the physical positions (Mb) of eight desi chickpea chromosomes. The Y-axis represents the SNP-index, which is estimated according to 5 Mb physical interval with a 10 kb sliding window. Using the statistical confidence intervals under null hypothesis of no QTL (P < 0.05) as per Takagi et al.,⁴² the Δ (SNP-index) was plotted. One candidate major genomic interval (836,859–872,247 bp) (marked by asterisk) harbouring a robust SW QTL (CaqSW1.1) was defined using the criteria of SNP-index near to 1 and 0 in HSB and LSB, respectively, and the confidence value of Δ (SNP-index) above 0.5 (at significance level P < 0.05). This figure is available in black and white in print and in colour at DNA Research online.