Table 8. Summary of significantly differentially expressed siRNAs and likely differentially expressed siRNAs and their triggers.

A. P-value & fold change from G. arboreum leaf, flower, and boll comparisons.
	FDR p < 0.05		Fold change ≥2
	PGT for phasiRNAs	PGT for non-phasiRNAs	PGT for phasiRNAs	PGT for non-phasiRNAs
PGTs	49	83	22	54
Shared (phased & non-phased)	13		16
Total	119		60
Shared (p-value & fold change)	34
Total	145
B. Based on fold change from G. arboreum leaf, flower, and boll comparisons shown by source of trigger for siRNA production.
	Differentially Expressed Triggers
	miRNA	isomiRNA	pha-siRNA	nonpha-siRNA
PGTs	24	39	21	15
Shared (phased & non-phased)	9		9
Total	54		27
Shared (p-value & fold change)	27
Total	54