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. 2015 Jun 2;8:206. doi: 10.1186/s13104-015-1190-0

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© Velloso et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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How to register an application in BOWS. This can be done by a webservice transaction or by filling this form in BOWS services website. In this example, a Submit Job client for running MUSCLE would be automatically compiled and disposed in the website (see the green button in Figure 3). To run the application, the command line would be: java-jar runmuscleSumitJob.jar-sequence_file < myfile > -user < name > . A link for creating the “arrow” program would appear (red button in Figure 3). It downloads a base “arrow” (Arrow_runmuscle.jar), a shell script (Arrow_runmuscle.sh) to complement the base “arrow” by informing the application execution command line in it, and a shell script to edit cron scheduler to execute the “arrow”.