TABLE 3.
Kinetic constants for nucleotide incorporation by FMDV 3Dwt, 3D(K18E), 3D(K20E), 3D(K18A), 3D(K20A), and 3D(KAKA)
Enzyme | A on sym/sub-AUa |
R on sym/sub-AUa |
(kpol/Kd,ATP)ATP/(kpol/Kd,RTP)RTP (104)e | ||||
---|---|---|---|---|---|---|---|
Kd,ATP (μM)b | kpol (s−1)c | kpol/Kd,ATP (μM−1s−1)d | Kd,RTP (μM)b | kpol (10−3 s−1)c | kpol/Kd,RTP (10−6 μM−1s−1)d | ||
3Dwt | 44 ± 7 | 255 ± 9 | 5.8 ± 0.9 | 1604 ± 271 | 16 ± 2 | 10 ± 2 | 58 ± 15 |
3D(K18E) | 62 ± 17 | 102 ± 6 | 1.6 ± 0.5 | 1587 ± 125 | 23 ± 1 | 14 ± 1 | 11 ± 4 |
3D(K20E) | 76 ± 43 | 101 ± 11 | 1.3 ± 0.8 | 2144 ± 409 | 23 ± 3 | 11 ± 2 | 12 ± 8 |
3D(K18A) | 85 ± 20 | 98 ± 5 | 1.2 ± 0.3 | 1087 ± 110 | 14 ± 1 | 13 ± 2 | 9 ± 3 |
3D(K20A) | 814 ± 547 | 177 ± 50 | 0.2 ± 0.2 | 883 ± 99 | 9 ± 1 | 10 ± 2 | 2 ± 2 |
3D(KAKA) | 434 ± 227 | 161 ± 25 | 0.4 ± 0.2 | 1421 ± 203 | 14 ± 1 | 10 ± 2 | 4 ± 2 |
Kinetic parameters were obtained from the data shown in Fig. 3 according to the procedures detailed in Materials and Methods. A, adenosine; R, ribavirin.
Kd,NTP, dissociation constant for NTP binding.
kpol, optimal polymerization rate constant.
kpol/Kd,NTP, catalytic efficiency.
(kpol/Kd,ATP)ATP/(kpol/Kd,RTP)RTP, selectivity for discrimination in favor of incorporating the cognate nucleotide (AMP) instead of the nucleotide analogue (RMP).