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. 2015 Apr 22;89(13):6874–6886. doi: 10.1128/JVI.00528-15

TABLE 2.

ORFs associated with newly identified translation initiation sites

TIS (nt)a Strand Read count ORF length (aa)e ORF typeb Associated ORFc Expression timingd
4398 11,854 57 cORF 001 (C23L) E
10518 2,264 75 tORF 13 PR
17588 2,794 201 tORF 23 (C5L) PR
19282 8,367 201 tORF 25 (C3L) PR
22821 1,550 170 tORF 29 (N2L) PR
24221 1,260 447 tORF 30 (M1L) PR
27685 22,052 26 dORF 35 (K4L) PR
33845 1,503 295 tORF 43 (F4L) PR
34242 6,881 97 tORF 44 (F5L) PR
35417 6,975 76 cORF 46 (F7L) E
35663 + 1,003 33 nORF PR
38817 3,507 338 tORF 50 (F11L) PR
42113 4,315 48 tORF 53 (F14L) PR
42315 2,737 25 tORF 53.5 (F14.5) PR
43072 2,734 42 tORF 55 (F16L) PR
48073 5,450 97 tORF 59 (E3L) E
49329 + 2,985 310 cORF 61 (E5R) E
49398 + 3,430 287 tORF 61 (E5R) E
52222 + 8,181 153 tORF 63 (E7R) PR
52243 + 3,244 146 tORF 63 (E7R) PR
52276 + 8,194 135 tORF 63 (E7R) PR
59240 2,578 29 dORF 68 (O1L) E
59340 1,380 664 tORF 68 (O1L) PR
64458 1,503 63 tORF 74 (I5L) PR
79355 + 1,070 179 tORF 91 (L4R) PR
81353 + 2,204 323 tORF 95 (J3R) PR
83399 + 2,686 29 dORF 98 (J6R) PR
88545 3,524 73 tORF 101 (H3L) E
91919 + 23,869 187 tORF 103 (H5R) PR
104029 + 2,614 209 tORF 114 (D9R) E
110994 4,437 31 dORF 120 (A2L) PR
115895 1,043 32 tORF 126 (A7L) PR
117574 2,267 30 dORF 126 (A7L) PR
118061 + 1,894 262 tORF 127 (A8R) E
123568 6,787 49 tORF 132 (A13L) PR
126224 + 5,584 488 tORF 138 (A18R) PR
127877 25,602 68 tORF 139 (A19L) PR
131219 + 5,414 1156 cORF 144 (A24R) PR
131876 1,293 29 nORF PR
137695 2,130 47 dORF 148 (A25L) PR
142279 + 1,115 51 tORF 154 (A31R) E
143165 1,120 254 tORF 155 (A32L) PR
147704 + 1,833 257 cORF 163 (A39R) PR
151371 + 2,340 74 tORF 169 PR
154612 1,368 231 tORF 173 (A47L) E
154775 + 1,124 204 cORF 174 (A48R) E
158807 + 1,410 29 dORF 178 (A52R) E
163219 + 8,677 37 dORF 181.5 PR
175192 + 1,723 33 dORF 197 (B15R) PR
179114 + 4,622 347 tORF 200 (B19R) PR
190314 + 12,001 57 cORF (C23L) E
a

TIS, translation initiation site; position of start codon.

b

cORF, correction of annotated ORF; dORF, downstream frameshifting ORF; nORF, previous unannotated noncoding region ORF; tORF, downstream truncated ORF or upstream nonframeshifting ORF.

c

WR strain ORF numbers are given; common ORF names are in parentheses.

d

E, early stage (2 h); PR, postreplicative state (4 or 8 h).

e

aa, amino acids.

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