TABLE 1.
Comparison of the genome of the wild-type C. muridarum isolate used in this study to those of other C. muridarum reference strains
Gene ID | Description | Position | Base |
||
---|---|---|---|---|---|
C. muridarum used in study | C. muridarum Nigga | C. muridarum Weissb | |||
tc0007 | Exodeoxyribonuclease V, beta chain, putative | 10505 | A | ||
10558 | A,C | ||||
10564 | A | ||||
tc0027 | Conserved hypothetical protein | 32915 | G | ||
tc0052 | Major outer membrane protein, porin; OmpA | 58882 | T | ||
58904 | T | ||||
59065 | C | C | T | ||
tc0107 | Lipoprotein | 126406 | G | G | |
126416 | A | ||||
None | Intergenic | 126383 | G | ||
126436 | A | ||||
126475 | A | ||||
tc0124 | Transcription repair-coupling factor; TrcF | 151212 | T | T | |
tc_r05 | rRNA-23S rRNA | 158800 | G | ||
tc0138 | Phospho-N-acetylmuramoylpentapeptide transferase; MraY | 169451 | TTTT | T | T |
tc0168 | Ribosomal protein L34; RpmH | 200671 | C | G | C |
tc0301 | Methionyl tRNA synthetase; MetG | 358414 | T | ||
tc0338 | ABC transporter, periplasmic substrate binding protein | 401302 | G | ||
tc0341 | ABC transporter, permease protein | 403623 | T | ||
403624 | C | A | A | ||
403626 | C | ||||
403652 | C,G | T | C | ||
403714 | G | ||||
tc0342 | ABC transporter, permease protein | 404473 | T | ||
404884 | A | A | |||
tc0343 | 1-Deoxy-d-xylulose 5-phosphate reductoisomerase; Dxr | 405819 | G | ||
tc0359 | Hypothetical protein | 419119 | C | ||
tc0408 | Hypothetical protein | 468932 | T | G | T |
tc0412 | Hypothetical protein | 473118 | A | A | |
tc0437 | Adherence factor | 515204 | A | C | C |
tc0493 | Phenylacrylic acid decarboxylase; UbiX | 600435 | A | C | C |
tc0708 | Translation elongation factor; Tuf | 712587 | C | ||
Hypothetical protein | 846475 | G | G | ||
tc0727 | Outer membrane protein; OmcB | 866121 | T | G | T |
tc0832 | DNA polymerase III alpha subunit; DnaE | 967487 | A | A | |
tc0879 | Hypothetical protein | 1022529 | A | ||
1022551 | A | ||||
tc0893 | groEL-2 | 1035913 | A |
C. muridarum Nigg isolate accession number: AE002160.2.
C. muridarum Weiss isolate accession number: ACOW00000000.