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. 2015 Jun 15;83(7):2870–2881. doi: 10.1128/IAI.00106-15

TABLE 1.

Comparison of the genome of the wild-type C. muridarum isolate used in this study to those of other C. muridarum reference strains

Gene ID Description Position Base
C. muridarum used in study C. muridarum Nigga C. muridarum Weissb
tc0007 Exodeoxyribonuclease V, beta chain, putative 10505 A
10558 A,C
10564 A
tc0027 Conserved hypothetical protein 32915 G
tc0052 Major outer membrane protein, porin; OmpA 58882 T
58904 T
59065 C C T
tc0107 Lipoprotein 126406 G G
126416 A
None Intergenic 126383 G
126436 A
126475 A
tc0124 Transcription repair-coupling factor; TrcF 151212 T T
tc_r05 rRNA-23S rRNA 158800 G
tc0138 Phospho-N-acetylmuramoylpentapeptide transferase; MraY 169451 TTTT T T
tc0168 Ribosomal protein L34; RpmH 200671 C G C
tc0301 Methionyl tRNA synthetase; MetG 358414 T
tc0338 ABC transporter, periplasmic substrate binding protein 401302 G
tc0341 ABC transporter, permease protein 403623 T
403624 C A A
403626 C
403652 C,G T C
403714 G
tc0342 ABC transporter, permease protein 404473 T
404884 A A
tc0343 1-Deoxy-d-xylulose 5-phosphate reductoisomerase; Dxr 405819 G
tc0359 Hypothetical protein 419119 C
tc0408 Hypothetical protein 468932 T G T
tc0412 Hypothetical protein 473118 A A
tc0437 Adherence factor 515204 A C C
tc0493 Phenylacrylic acid decarboxylase; UbiX 600435 A C C
tc0708 Translation elongation factor; Tuf 712587 C
Hypothetical protein 846475 G G
tc0727 Outer membrane protein; OmcB 866121 T G T
tc0832 DNA polymerase III alpha subunit; DnaE 967487 A A
tc0879 Hypothetical protein 1022529 A
1022551 A
tc0893 groEL-2 1035913 A
a

C. muridarum Nigg isolate accession number: AE002160.2.

b

C. muridarum Weiss isolate accession number: ACOW00000000.