TABLE 8.
Genes and proteins reported to be more highly expressed in P. aeruginosa biofilms than in planktonic cells in three or more experimental investigations
| Locus IDa | Gene | Tb | Pc | Noted | Annotation |
|---|---|---|---|---|---|
| PA0139 | ahpC | 0 | 3 | H2O2 | Alkyl hydroperoxide reductase subunit C |
| PA0263 | hcpC | 1 | 2 | Secreted protein Hcp | |
| PA0515 | 3 | 0 | O2 | Probable transcriptional regulator | |
| PA0588 | 2 | 2 | O2, SP | Conserved hypothetical protein | |
| PA0713 | 3 | 0 | O2, SP | Hypothetical protein | |
| PA1123 | 3 | 0 | O2, SP | Hypothetical protein | |
| PA1546 | hemN | 3 | 0 | O2, SP | Oxygen-independent coproporphyrinogen III oxidase |
| PA1555 | ccoP2 | 3 | 0 | O2, SP | Cytochrome c oxidase, cbb3 type, CcoP subunit |
| PA1556 | ccoO2 | 3 | 0 | O2 | Cytochrome c oxidase, cbb3 type, CcoO subunit |
| PA1673 | 3 | 0 | O2 | Hypothetical protein | |
| PA1746 | 3 | 0 | O2, SP | Hypothetical protein | |
| PA1904 | phzF2 | 3 | 0 | PHZ, SP | Probable phenazine biosynthesis protein |
| PA1905 | phzG2 | 2 | 1 | PHZ, SP | Probable pyridoxamine 5′-phosphate oxidase |
| PA2274 | 3 | 0 | O2 | Hypothetical protein | |
| PA2386 | pvdA | 0 | 3 | l-Ornithine N5-oxygenase | |
| PA2782 | 3 | 0 | Hypothetical protein | ||
| PA3126 | ibpA | 3 | 1 | O2 | Heat shock protein IbpA |
| PA3309 | uspK | 2 | 2 | O2 | Usp-type stress protein essential for survival during pyruvate fermentation |
| PA3572 | 3 | 0 | O2, SP | Hypothetical protein | |
| PA4067 | oprG | 2 | 1 | O2 | Outer membrane protein OprG precursor |
| PA4211 | phzB1 | 3 | 1 | PHZ, SP | Probable phenazine biosynthesis protein |
| PA4217 | phzS | 2 | 1 | PHZ | Flavin-containing monooxygenase |
| PA4236 | katA | 1 | 2 | O2, H2O2, SP | Catalase |
| PA4352 | 3 | 2 | O2, SP | Conserved hypothetical protein | |
| PA4610 | 3 | 0 | O2 | Hypothetical protein | |
| PA4765 | omlA | 2 | 1 | Outer membrane lipoprotein OmlA precursor | |
| PA5427 | adhA | 3 | 1 | O2, SP | Alcohol dehydrogenase |
| PA5460 | 3 | 0 | Hypothetical protein | ||
| PA5475 | 3 | 0 | O2, SP | Hypothetical protein |
a
ID, identification.
b
T, number of studies with transcriptomic identification.
c
P, number of studies with proteomic identification.
d
H2O2, peroxide stress; SP, stationary phase; O2, oxygen limitation; PHZ, phenazine biosynthesis.